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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829801 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829802 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829803 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829804 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829805 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829806 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829807 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829808 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829809 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829810 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829811 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829812 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829813 8xcz:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829814 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829815 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829816 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829817 8xd1:A (2.96) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829818 8xd2:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829819 8xd3:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829820 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829821 8xd4:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829822 8xd5:A (2.75) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    829823 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    829824 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    829825 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829826 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829827 8xe7:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286
    N/A Q8IXJ6 38647411
    829828 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    829829 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    829830 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    829831 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    829832 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    829833 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    829834 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    829835 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    829836 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    829837 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    829838 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    829839 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    829840 8xfd:D (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    829841 8xfm:A (2.6) BS01 A1LU6 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    829842 8xfm:A (2.6) BS02 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    829843 8xfq:A (2.25) BS01 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829844 8xfq:A (2.25) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829845 8xfq:A (2.25) BS03 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829846 8xfq:A (2.25) BS04 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829847 8xfq:A (2.25) BS05 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829848 8xfq:A (2.25) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829849 8xfq:A (2.25) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829850 8xfq:A (2.25) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829851 8xfq:A (2.25) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829852 8xfq:A (2.25) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829853 8xfq:A (2.25) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829854 8xfr:A (2.0) BS01 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829855 8xfr:A (2.0) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829856 8xfr:A (2.0) BS03 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829857 8xfr:A (2.0) BS04 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829858 8xfr:A (2.0) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829859 8xfr:A (2.0) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829860 8xfr:A (2.0) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829861 8xfr:A (2.0) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829862 8xfr:A (2.0) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829863 8xfr:A (2.0) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829864 8xfr:A (2.0) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    829865 8xfv:A (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829866 8xfv:A (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829867 8xfv:B (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829868 8xfv:B (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829869 8xfv:C (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829870 8xfv:C (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829871 8xfv:D (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829872 8xfv:D (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829873 8xfv:E (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829874 8xfv:E (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829875 8xfv:F (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829876 8xfv:F (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829877 8xfv:G (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829878 8xfv:G (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829879 8xfv:H (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829880 8xfv:H (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829881 8xfv:I (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829882 8xfv:I (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829883 8xfv:J (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829884 8xfv:J (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829885 8xfv:X (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829886 8xfv:X (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    829887 8xfy:A (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829888 8xfy:B (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829889 8xfy:C (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829890 8xfy:D (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829891 8xfy:E (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829892 8xfy:F (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829893 8xfy:G (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829894 8xfy:H (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829895 8xfy:I (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829896 8xfy:J (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    829897 8xga:A (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829898 8xga:A (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829899 8xga:B (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829900 8xga:B (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829901 8xga:C (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829902 8xga:C (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829903 8xga:D (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829904 8xga:D (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829905 8xga:E (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829906 8xga:E (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829907 8xga:F (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829908 8xga:F (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829909 8xga:G (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829910 8xga:G (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829911 8xga:H (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829912 8xga:H (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829913 8xga:I (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829914 8xga:I (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829915 8xga:J (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829916 8xga:J (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829917 8xga:K (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    829918 8xga:K (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    829919 8xgb:B (3.24) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829920 8xgb:B (3.24) BS02 A1D49 2.3.2.5 GO:0005515 ... Q16769 38817193
    829921 8xgc:2 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    829922 8xgc:2 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    829923 8xgc:2 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    829924 8xgc:2 (3.7) BS04 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    829925 8xgc:3 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    829926 8xgc:3 (3.7) BS02 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    829927 8xgc:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    829928 8xgc:3 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    829929 8xgc:4 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P30665 38448592
    829930 8xgc:4 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38448592
    829931 8xgc:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38448592
    829932 8xgc:5 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38448592
    829933 8xgc:5 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    829934 8xgc:5 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 38448592
    829935 8xgc:5 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    829936 8xgc:6 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38448592
    829937 8xgc:6 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    829938 8xgc:6 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 38448592
    829939 8xgc:6 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    829940 8xgc:7 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    829941 8xgc:7 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    829942 8xgc:7 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    829943 8xgc:8 (3.7) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38448592
    829944 8xgc:8 (3.7) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 38448592
    829945 8xgc:I (3.7) BS01 peptide ? GO:0000076 ... P53840 38448592
    829946 8xgc:I (3.7) BS02 dna ? GO:0000076 ... P53840 38448592
    829947 8xgc:I (3.7) BS03 dna ? GO:0000076 ... P53840 38448592
    829948 8xgc:J (3.7) BS01 dna ? GO:0000076 ... Q04659 38448592
    829949 8xgc:J (3.7) BS02 dna ? GO:0000076 ... Q04659 38448592
    829950 8xgc:M (3.7) BS01 dna ? GO:0000785 ... Q04636 38448592
    829951 8xgk:A (1.32) BS01 A1LVB ? N/A Q14145 38408347
    829952 8xgr:R (3.2) BS01 peptide ? GO:0000122 ... P24530 38128244
    829953 8xgt:A (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829954 8xgt:A (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829955 8xgt:B (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829956 8xgt:B (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829957 8xgt:C (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829958 8xgt:C (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829959 8xgt:D (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829960 8xgt:D (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829961 8xgt:E (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829962 8xgt:E (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829963 8xgt:F (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829964 8xgt:F (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829965 8xgt:F (2.813) BS03 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829966 8xgt:G (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829967 8xgt:G (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829968 8xgt:H (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829969 8xgt:H (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829970 8xgt:I (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829971 8xgt:I (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829972 8xgt:J (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829973 8xgt:J (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829974 8xgt:K (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829975 8xgt:K (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829976 8xgt:L (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829977 8xgt:L (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    829978 8xgv:A (1.42) BS01 A1LVC ? N/A Q14145 38408347
    829979 8xgy:A (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829980 8xgy:A (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829981 8xgy:A (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829982 8xgy:B (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829983 8xgy:B (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829984 8xgy:C (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829985 8xgy:C (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829986 8xgy:C (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829987 8xgy:D (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829988 8xgy:D (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829989 8xgy:D (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829990 8xgy:E (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829991 8xgy:E (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829992 8xgy:E (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829993 8xgy:F (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829994 8xgy:F (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829995 8xgy:F (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829996 8xgy:G (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829997 8xgy:G (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    829998 8xgy:H (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    829999 8xgy:H (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    830000 8xgy:H (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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