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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    829401 8x19:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    829402 8x19:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    829403 8x19:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    829404 8x19:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    829405 8x19:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    829406 8x19:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    829407 8x19:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    829408 8x19:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    829409 8x19:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    829410 8x19:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    829411 8x19:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    829412 8x19:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    829413 8x19:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    829414 8x19:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    829415 8x19:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829416 8x19:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829417 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829418 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829419 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829420 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829421 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829422 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829423 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829424 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829425 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    829426 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    829427 8x19:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    829428 8x1a:B (1.604) BS01 G6P ? GO:0015888 ... A0A0H3AFK0 38704889
    829429 8x1c:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    829430 8x1c:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    829431 8x1c:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    829432 8x1c:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    829433 8x1c:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    829434 8x1c:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    829435 8x1c:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    829436 8x1c:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    829437 8x1c:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    829438 8x1c:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    829439 8x1c:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    829440 8x1c:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    829441 8x1c:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    829442 8x1c:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    829443 8x1c:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    829444 8x1c:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829445 8x1c:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829446 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    829447 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    829448 8x1c:L (3.2) BS01 dna ? GO:0000786 ... O43257 38331872
    829449 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829450 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829451 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829452 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829453 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    829454 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    829455 8x1c:S (3.2) BS01 dna 3.6.4.- GO:0000079 ... P60709 38331872
    829456 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    829457 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    829458 8x1c:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    829459 8x1c:W (3.2) BS01 dna ? GO:0000278 ... O95619 38331872
    829460 8x1f:A (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    829461 8x1f:B (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    829462 8x1n:A (3.31) BS01 ZN ? GO:0005615 ... P02771 38678117
    829463 8x2a:A (1.3) BS01 LTJ 2.7.10.2 GO:0004672 ... P51813 N/A
    829464 8x2h:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    829465 8x2i:A (2.5) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    829466 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    829467 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    829468 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    829469 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    829470 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    829471 8x2j:B (2.7) BS01 HEC ? N/A A9WEV3 38299372
    829472 8x2j:B (2.7) BS02 HEC ? N/A A9WEV3 38299372
    829473 8x2j:B (2.7) BS03 SF4 ? N/A A9WEV3 38299372
    829474 8x2j:B (2.7) BS04 SF4 ? N/A A9WEV3 38299372
    829475 8x2j:B (2.7) BS05 SF4 ? N/A A9WEV3 38299372
    829476 8x2j:B (2.7) BS06 F3S ? N/A A9WEV3 38299372
    829477 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    829478 8x2j:C (2.7) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    829479 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    829480 8x2j:C (2.7) BS04 JL3 ? GO:0005886 ... A9WEV4 38299372
    829481 8x2j:C (2.7) BS05 JM9 ? GO:0005886 ... A9WEV4 38299372
    829482 8x2j:D (2.7) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    829483 8x2j:E (2.7) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    829484 8x2j:E (2.7) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    829485 8x2j:F (2.7) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    829486 8x2j:F (2.7) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    829487 8x2j:F (2.7) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    829488 8x2k:A (3.03) BS01 5YM ? GO:0004930 ... P0ABE7
    P46089    		 N/A
    829489 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    829490 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    829491 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    829492 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    829493 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    829494 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    829495 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    829496 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    829497 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    829498 8x36:A (2.28) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829499 8x36:A (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829500 8x36:B (2.28) BS01 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829501 8x36:B (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829502 8x36:B (2.28) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829503 8x37:A (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829504 8x37:A (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829505 8x37:B (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829506 8x37:B (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829507 8x37:B (1.98) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829508 8x37:B (1.98) BS04 MG 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    829509 8x39:A (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    829510 8x39:A (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    829511 8x39:A (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    829512 8x39:A (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    829513 8x39:B (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    829514 8x39:B (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    829515 8x39:B (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    829516 8x39:B (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    829517 8x3a:A (-1.00) BS01 CA ? GO:0000272 ... A3DK52 38501488
    829518 8x3a:A (-1.00) BS02 CA ? GO:0000272 ... A3DK52 38501488
    829519 8x3a:A (-1.00) BS03 CA ? GO:0000272 ... A3DK52 38501488
    829520 8x3a:A (-1.00) BS04 CA ? GO:0000272 ... A3DK52 38501488
    829521 8x3h:A (0.93) BS01 FE ? GO:0005576 ... P02789 N/A
    829522 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    829523 8x3r:A (1.76) BS01 peptide ? GO:0000122 ... P61964 38744853
    829524 8x3s:A (1.87) BS01 peptide ? GO:0000122 ... P61964 38744853
    829525 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    829526 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    829527 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    829528 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    829529 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    829530 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    829531 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    829532 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    829533 8x51:A (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829534 8x51:A (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829535 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829536 8x51:B (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829537 8x51:B (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829538 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829539 8x52:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    829540 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    829541 8x53:B (3.0) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    829542 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    829543 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    829544 8x54:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    829545 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    829546 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    829547 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    829548 8x5d:G (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829549 8x5d:H (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829550 8x5d:I (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829551 8x5d:J (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829552 8x5d:K (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829553 8x5d:L (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    829554 8x5d:N (3.1) BS01 rna ? GO:0003723 ... P9WJF5 38218299
    829555 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829556 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829557 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829558 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829559 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829560 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829561 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829562 8x5j:A (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    829563 8x5j:B (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    829564 8x5k:A (1.8) BS01 3YT 2.7.10.2 GO:0004672 ... P43405 N/A
    829565 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    829566 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    829567 8x5m:A (2.0) BS01 Y4O 2.7.11.24 GO:0004672 ... P45983 N/A
    829568 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829569 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829570 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829571 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829572 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829573 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    829574 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    829575 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    829576 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    829577 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    829578 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    829579 8x63:B (3.2) BS01 Y5E ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    829580 8x64:B (3.4) BS01 Y5R ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    829581 8x6f:C (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P47768 38844782
    829582 8x6f:D (3.7) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    829583 8x6f:D (3.7) BS02 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    829584 8x6f:E (3.7) BS01 dna ? GO:0003677 ... P0A0J0 38844782
    829585 8x6f:E (3.7) BS02 dna ? GO:0003677 ... P0A0J0 38844782
    829586 8x6g:D (3.3) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    829587 8x6g:H (3.3) BS01 dna ? GO:0003677 ... A0A390QYZ6 38844782
    829588 8x6g:H (3.3) BS02 dna ? GO:0003677 ... A0A390QYZ6 38844782
    829589 8x6m:A (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829590 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829591 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829592 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829593 8x6m:B (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829594 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    829595 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829596 8x6r:A (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    829597 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829598 8x6r:B (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    829599 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    829600 8x6r:C (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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