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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827201 8wb4:f (2.47) BS02 HEM ? GO:0005506 ... A0A222AI51 38806516
    827202 8wb4:h (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827203 8wb4:h (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827204 8wb4:h (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827205 8wb4:h (2.47) BS04 8CT ? GO:0009523 ... A0A222AIE4 38806516
    827206 8wb4:i (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    827207 8wb4:i (2.47) BS02 8CT ? GO:0005737 ... A0A222AI80 38806516
    827208 8wb4:i (2.47) BS03 CLA ? GO:0005737 ... A0A222AI80 38806516
    827209 8wb4:k (2.47) BS01 CLA ? GO:0005737 ... A0A222AIA0 38806516
    827210 8wb4:k (2.47) BS02 CLA ? GO:0005737 ... A0A222AIA0 38806516
    827211 8wb4:k (2.47) BS03 8CT ? GO:0005737 ... A0A222AIA0 38806516
    827212 8wb4:k (2.47) BS04 8CT ? GO:0005737 ... A0A222AIA0 38806516
    827213 8wb4:m (2.47) BS01 8CT ? N/A L1IFP3 38806516
    827214 8wb4:v (2.47) BS01 HEM ? N/A A0A222AI35 38806516
    827215 8wb4:x (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    827216 8wb4:y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    827217 8wb4:z (2.47) BS01 KC2 ? GO:0009523 ... A0A222AI96 38806516
    827218 8wb4:z (2.47) BS02 8CT ? GO:0009523 ... A0A222AI96 38806516
    827219 8wba:A (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    827220 8wba:A (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    827221 8wba:B (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    827222 8wba:B (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    827223 8wbd:B (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    827224 8wbd:C (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    827225 8wbd:b (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    827226 8wbq:A (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    827227 8wbq:B (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    827228 8wbt:A (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    827229 8wbt:B (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    827230 8wbt:C (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    827231 8wbt:D (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    827232 8wbu:A (1.7) BS01 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    827233 8wbu:A (1.7) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    827234 8wbv:A (1.95) BS01 DNO 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    827235 8wbv:A (1.95) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    827236 8wbx:B (3.23) BS01 A8S ? GO:0005524 ... Q84TH5 38050355
    827237 8wc3:R (3.0) BS01 UJL ? GO:0001594 ... Q923Y8 37963465
    827238 8wc4:R (3.1) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    827239 8wc6:R (3.2) BS01 PEA ? GO:0001594 ... Q923Y8 37963465
    827240 8wc7:R (3.1) BS01 VMK ? GO:0001594 ... Q923Y8 37963465
    827241 8wc8:R (2.9) BS01 VMT ? GO:0001594 ... Q96RJ0 37963465
    827242 8wc9:R (3.2) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    827243 8wca:R (3.48) BS01 PEA ? GO:0001594 ... Q96RJ0 37963465
    827244 8wcn:A (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827245 8wcn:A (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827246 8wcn:A (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827247 8wcn:B (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827248 8wcn:B (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827249 8wcn:B (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827250 8wcn:B (3.2) BS04 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827251 8wcn:B (3.2) BS05 MG 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    827252 8wco:A (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    827253 8wco:A (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    827254 8wco:B (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    827255 8wco:B (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    827256 8wco:C (2.6) BS01 ACO ? GO:0000287 ... Q9I562 38677288
    827257 8wco:C (2.6) BS02 ACO ? GO:0000287 ... Q9I562 38677288
    827258 8wd2:A (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    827259 8wd2:B (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    827260 8wd3:A (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    827261 8wd3:B (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    827262 8wd4:A (2.55) BS01 W7W 2.7.10.1 GO:0004672 ... P00533 38065292
    827263 8wd8:A (2.9) BS01 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827264 8wd8:A (2.9) BS02 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827265 8wd8:A (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827266 8wd8:A (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827267 8wd8:A (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827268 8wd8:A (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827269 8wd8:B (2.9) BS01 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827270 8wd8:B (2.9) BS02 dna ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827271 8wd8:B (2.9) BS03 ZN ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827272 8wd8:B (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827273 8wd8:B (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827274 8wd8:B (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    827275 8wdg:A (0.99) BS01 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    827276 8wdg:A (0.99) BS02 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    827277 8wdg:A (0.99) BS03 XYL 5.3.1.5 GO:0000287 ... P24300 37793321
    827278 8wdg:A (0.99) BS04 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    827279 8wdh:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    827280 8wdh:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    827281 8wdt:A (3.34) BS01 WCH ? GO:0001609 ... P29274 38171234
    827282 8wdu:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827283 8wdu:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827284 8wdu:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827285 8wdu:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    827286 8wdu:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    827287 8wdu:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827288 8wdu:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    827289 8wdu:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827290 8wdu:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827291 8wdu:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827292 8wdu:3 (2.24) BS01 Z41 ? GO:0005886 ... D3RP67 38347078
    827293 8wdu:3 (2.24) BS02 CRT ? GO:0005886 ... D3RP67 38347078
    827294 8wdu:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 38347078
    827295 8wdu:3 (2.24) BS04 BCL ? GO:0005886 ... D3RP67 38347078
    827296 8wdu:3 (2.24) BS05 CRT ? GO:0005886 ... D3RP67 38347078
    827297 8wdu:3 (2.24) BS06 BCL ? GO:0005886 ... D3RP67 38347078
    827298 8wdu:3 (2.24) BS07 CRT ? GO:0005886 ... D3RP67 38347078
    827299 8wdu:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827300 8wdu:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827301 8wdu:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827302 8wdu:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    827303 8wdu:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    827304 8wdu:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827305 8wdu:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    827306 8wdu:5 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    827307 8wdu:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827308 8wdu:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827309 8wdu:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827310 8wdu:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    827311 8wdu:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    827312 8wdu:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827313 8wdu:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    827314 8wdu:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    827315 8wdu:7 (2.24) BS06 BCL ? GO:0005886 ... D3RP69 38347078
    827316 8wdu:7 (2.24) BS07 CRT ? GO:0005886 ... D3RP69 38347078
    827317 8wdu:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827318 8wdu:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827319 8wdu:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827320 8wdu:9 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    827321 8wdu:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    827322 8wdu:9 (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    827323 8wdu:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    827324 8wdu:9 (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    827325 8wdu:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 38347078
    827326 8wdu:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    827327 8wdu:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    827328 8wdu:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    827329 8wdu:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    827330 8wdu:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827331 8wdu:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827332 8wdu:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827333 8wdu:C (2.24) BS01 HEM ? GO:0005506 ... O82947 38347078
    827334 8wdu:C (2.24) BS02 HEM ? GO:0005506 ... O82947 38347078
    827335 8wdu:C (2.24) BS03 HEM ? GO:0005506 ... O82947 38347078
    827336 8wdu:C (2.24) BS04 HEM ? GO:0005506 ... O82947 38347078
    827337 8wdu:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    827338 8wdu:C (2.24) BS06 Z41 ? GO:0005506 ... O82947 38347078
    827339 8wdu:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    827340 8wdu:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    827341 8wdu:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    827342 8wdu:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    827343 8wdu:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    827344 8wdu:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    827345 8wdu:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    827346 8wdu:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    827347 8wdu:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    827348 8wdu:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    827349 8wdu:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    827350 8wdu:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    827351 8wdu:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    827352 8wdu:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    827353 8wdu:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    827354 8wdu:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    827355 8wdu:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    827356 8wdu:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    827357 8wdu:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    827358 8wdu:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    827359 8wdu:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    827360 8wdu:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827361 8wdu:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    827362 8wdu:I (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    827363 8wdu:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827364 8wdu:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827365 8wdu:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827366 8wdu:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    827367 8wdu:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    827368 8wdu:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827369 8wdu:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    827370 8wdu:L (2.24) BS01 BCL ? GO:0009772 ... P51762 38347078
    827371 8wdu:L (2.24) BS02 BPH ? GO:0009772 ... P51762 38347078
    827372 8wdu:L (2.24) BS03 UQ8 ? GO:0009772 ... P51762 38347078
    827373 8wdu:L (2.24) BS04 UQ8 ? GO:0009772 ... P51762 38347078
    827374 8wdu:L (2.24) BS05 BCL ? GO:0009772 ... P51762 38347078
    827375 8wdu:L (2.24) BS06 UQ8 ? GO:0009772 ... P51762 38347078
    827376 8wdu:L (2.24) BS07 FE ? GO:0009772 ... P51762 38347078
    827377 8wdu:L (2.24) BS08 BCL ? GO:0009772 ... P51762 38347078
    827378 8wdu:L (2.24) BS09 BPH ? GO:0009772 ... P51762 38347078
    827379 8wdu:L (2.24) BS10 MQ8 ? GO:0009772 ... P51762 38347078
    827380 8wdu:M (2.24) BS01 BPH ? GO:0009772 ... P51763 38347078
    827381 8wdu:M (2.24) BS02 BCL ? GO:0009772 ... P51763 38347078
    827382 8wdu:M (2.24) BS03 UQ8 ? GO:0009772 ... P51763 38347078
    827383 8wdu:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    827384 8wdu:M (2.24) BS05 BCL ? GO:0009772 ... P51763 38347078
    827385 8wdu:M (2.24) BS06 BCL ? GO:0009772 ... P51763 38347078
    827386 8wdu:M (2.24) BS07 BPH ? GO:0009772 ... P51763 38347078
    827387 8wdu:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    827388 8wdu:M (2.24) BS09 CRT ? GO:0009772 ... P51763 38347078
    827389 8wdu:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827390 8wdu:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827391 8wdu:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827392 8wdu:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    827393 8wdu:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    827394 8wdu:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    827395 8wdu:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    827396 8wdu:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    827397 8wdu:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    827398 8wdu:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    827399 8wdu:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    827400 8wdu:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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