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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    824401 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824402 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    824403 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    824404 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    824405 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    824406 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    824407 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    824408 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    824409 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    824410 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    824411 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    824412 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    824413 8v83:I (2.53) BS01 rna ? GO:0003674 ... P53136 38632236
    824414 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    824415 8v83:K (2.53) BS01 rna ? GO:0000462 ... P38779 38632236
    824416 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    824417 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    824418 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    824419 8v83:N (2.53) BS01 rna ? GO:0002181 ... P05748 38632236
    824420 8v83:N (2.53) BS02 rna ? GO:0002181 ... P05748 38632236
    824421 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    824422 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    824423 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    824424 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    824425 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    824426 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    824427 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    824428 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    824429 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    824430 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    824431 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    824432 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    824433 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    824434 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    824435 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    824436 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    824437 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    824438 8v83:i (2.53) BS01 rna ? GO:0002181 ... P05745 38632236
    824439 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    824440 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    824441 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    824442 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    824443 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    824444 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    824445 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    824446 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    824447 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    824448 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    824449 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    824450 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    824451 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    824452 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    824453 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    824454 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    824455 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    824456 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    824457 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    824458 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    824459 8v84:3 (2.7) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    824460 8v84:8 (2.7) BS01 rna ? GO:0003674 ... P36080 38632236
    824461 8v84:A (2.7) BS01 rna ? GO:0000027 ... Q08235 38632236
    824462 8v84:B (2.7) BS01 rna ? GO:0000027 ... P14126 38632236
    824463 8v84:C (2.7) BS01 rna ? GO:0002181 ... P10664 38632236
    824464 8v84:C (2.7) BS02 rna ? GO:0002181 ... P10664 38632236
    824465 8v84:D (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    824466 8v84:E (2.7) BS01 rna ? GO:0000027 ... Q02326 38632236
    824467 8v84:F (2.7) BS01 rna ? GO:0000463 ... P05737 38632236
    824468 8v84:G (2.7) BS01 rna ? GO:0000470 ... P17076 38632236
    824469 8v84:G (2.7) BS02 rna ? GO:0000470 ... P17076 38632236
    824470 8v84:G (2.7) BS03 rna ? GO:0000470 ... P17076 38632236
    824471 8v84:H (2.7) BS01 rna ? GO:0002181 ... P05738 38632236
    824472 8v84:I (2.7) BS01 rna ? GO:0003674 ... P53136 38632236
    824473 8v84:J (2.7) BS01 rna ? GO:0000280 ... P36049 38632236
    824474 8v84:K (2.7) BS01 rna ? GO:0000462 ... P38779 38632236
    824475 8v84:L (2.7) BS01 rna ? GO:0002181 ... Q12690 38632236
    824476 8v84:L (2.7) BS02 rna ? GO:0002181 ... Q12690 38632236
    824477 8v84:M (2.7) BS01 rna ? GO:0000027 ... P36105 38632236
    824478 8v84:N (2.7) BS01 rna ? GO:0002181 ... P05748 38632236
    824479 8v84:N (2.7) BS02 rna ? GO:0002181 ... P05748 38632236
    824480 8v84:O (2.7) BS01 rna ? GO:0000470 ... P26784 38632236
    824481 8v84:P (2.7) BS01 rna ? GO:0000448 ... P05740 38632236
    824482 8v84:P (2.7) BS02 rna ? GO:0000448 ... P05740 38632236
    824483 8v84:Q (2.7) BS01 rna ? GO:0002181 ... P0CX49 38632236
    824484 8v84:R (2.7) BS01 rna ? GO:0000460 ... P10962 38632236
    824485 8v84:S (2.7) BS01 rna ? GO:0002181 ... P0CX23 38632236
    824486 8v84:V (2.7) BS01 rna ? GO:0002181 ... P0CX41 38632236
    824487 8v84:W (2.7) BS01 rna ? GO:0000027 ... P33201 38632236
    824488 8v84:Y (2.7) BS01 rna ? GO:0002181 ... P05743 38632236
    824489 8v84:Y (2.7) BS02 rna ? GO:0002181 ... P05743 38632236
    824490 8v84:Z (2.7) BS01 rna ? GO:0000027 ... P38789 38632236
    824491 8v84:a (2.7) BS01 rna ? GO:0000055 ... P0CX43 38632236
    824492 8v84:b (2.7) BS01 rna ? GO:0000054 ... Q02892 38632236
    824493 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    824494 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    824495 8v84:e (2.7) BS01 rna ? GO:0002181 ... P38061 38632236
    824496 8v84:f (2.7) BS01 rna ? GO:0000027 ... P05744 38632236
    824497 8v84:h (2.7) BS01 rna ? GO:0000463 ... P0CX84 38632236
    824498 8v84:h (2.7) BS02 rna ? GO:0000463 ... P0CX84 38632236
    824499 8v84:i (2.7) BS01 rna ? GO:0002181 ... P05745 38632236
    824500 8v84:j (2.7) BS01 rna ? GO:0000448 ... P49166 38632236
    824501 8v84:j (2.7) BS02 rna ? GO:0000448 ... P49166 38632236
    824502 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    824503 8v84:l (2.7) BS01 rna ? GO:0000463 ... Q08962 38632236
    824504 8v84:m (2.7) BS01 rna ? GO:0000463 ... Q04660 38632236
    824505 8v84:n (2.7) BS01 rna ? GO:0000462 ... P53261 38632236
    824506 8v84:n (2.7) BS02 rna ? GO:0000462 ... P53261 38632236
    824507 8v84:o (2.7) BS01 rna ? GO:0000463 ... P53927 38632236
    824508 8v84:q (2.7) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    824509 8v84:r (2.7) BS01 rna ? GO:0000460 ... P40078 38632236
    824510 8v84:t (2.7) BS01 rna ? GO:0000463 ... P40693 38632236
    824511 8v84:t (2.7) BS02 rna ? GO:0000463 ... P40693 38632236
    824512 8v84:u (2.7) BS01 rna ? GO:0001671 ... Q07915 38632236
    824513 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    824514 8v84:v (2.7) BS01 rna ? GO:0003674 ... P40007 38632236
    824515 8v84:v (2.7) BS02 rna ? GO:0003674 ... P40007 38632236
    824516 8v84:w (2.7) BS01 rna ? GO:0003674 ... P35178 38632236
    824517 8v84:x (2.7) BS01 rna ? GO:0000055 ... P38805 38632236
    824518 8v84:y (2.7) BS01 rna ? GO:0000054 ... Q12522 38632236
    824519 8v86:A (2.47) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824520 8v86:A (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824521 8v86:A (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824522 8v86:B (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824523 8v86:B (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824524 8v86:B (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824525 8v86:C (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824526 8v86:C (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824527 8v86:C (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824528 8v86:D (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824529 8v86:D (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824530 8v86:D (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824531 8v86:E (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824532 8v86:E (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824533 8v86:E (2.47) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    824534 8v87:3 (2.66) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    824535 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    824536 8v87:7 (2.66) BS01 rna ? GO:0000055 ... P43586 38632236
    824537 8v87:8 (2.66) BS01 rna ? GO:0003729 ... P39744 38632236
    824538 8v87:A (2.66) BS01 rna ? GO:0000027 ... Q08235 38632236
    824539 8v87:B (2.66) BS01 rna ? GO:0000027 ... P14126 38632236
    824540 8v87:C (2.66) BS01 rna ? GO:0002181 ... P10664 38632236
    824541 8v87:C (2.66) BS02 rna ? GO:0002181 ... P10664 38632236
    824542 8v87:D (2.66) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    824543 8v87:E (2.66) BS01 rna ? GO:0000027 ... Q02326 38632236
    824544 8v87:F (2.66) BS01 rna ? GO:0000463 ... P05737 38632236
    824545 8v87:G (2.66) BS01 rna ? GO:0000470 ... P17076 38632236
    824546 8v87:G (2.66) BS02 rna ? GO:0000470 ... P17076 38632236
    824547 8v87:G (2.66) BS03 rna ? GO:0000470 ... P17076 38632236
    824548 8v87:H (2.66) BS01 rna ? GO:0002181 ... P05738 38632236
    824549 8v87:I (2.66) BS01 rna ? GO:0003682 ... Q07896 38632236
    824550 8v87:J (2.66) BS01 rna ? GO:0000280 ... P36049 38632236
    824551 8v87:K (2.66) BS01 rna ? GO:0000462 ... P38779 38632236
    824552 8v87:L (2.66) BS01 rna ? GO:0002181 ... Q12690 38632236
    824553 8v87:L (2.66) BS02 rna ? GO:0002181 ... Q12690 38632236
    824554 8v87:M (2.66) BS01 rna ? GO:0000027 ... P36105 38632236
    824555 8v87:N (2.66) BS01 rna ? GO:0002181 ... P05748 38632236
    824556 8v87:N (2.66) BS02 rna ? GO:0002181 ... P05748 38632236
    824557 8v87:O (2.66) BS01 rna ? GO:0000470 ... P26784 38632236
    824558 8v87:P (2.66) BS01 rna ? GO:0000448 ... P05740 38632236
    824559 8v87:P (2.66) BS02 rna ? GO:0000448 ... P05740 38632236
    824560 8v87:Q (2.66) BS01 rna ? GO:0002181 ... P0CX49 38632236
    824561 8v87:R (2.66) BS01 rna ? GO:0002181 ... P0CX82 38632236
    824562 8v87:S (2.66) BS01 rna ? GO:0002181 ... P0CX23 38632236
    824563 8v87:U (2.66) BS01 rna ? GO:0002181 ... P05749 38632236
    824564 8v87:V (2.66) BS01 rna ? GO:0002181 ... P0CX41 38632236
    824565 8v87:W (2.66) BS01 rna ? GO:0000027 ... P33201 38632236
    824566 8v87:X (2.66) BS01 rna ? GO:0000027 ... P04456 38632236
    824567 8v87:X (2.66) BS02 rna ? GO:0000027 ... P04456 38632236
    824568 8v87:Y (2.66) BS01 rna ? GO:0002181 ... P05743 38632236
    824569 8v87:Y (2.66) BS02 rna ? GO:0002181 ... P05743 38632236
    824570 8v87:Z (2.66) BS01 rna ? GO:0002181 ... P0C2H6 38632236
    824571 8v87:a (2.66) BS01 rna ? GO:0000055 ... P0CX43 38632236
    824572 8v87:b (2.66) BS01 rna ? GO:0000054 ... Q02892 38632236
    824573 8v87:b (2.66) BS02 GDP ? GO:0000054 ... Q02892 38632236
    824574 8v87:c (2.66) BS01 rna ? GO:0002181 ... P14120 38632236
    824575 8v87:d (2.66) BS01 rna ? GO:0002181 ... P0C2H8 38632236
    824576 8v87:e (2.66) BS01 rna ? GO:0002181 ... P38061 38632236
    824577 8v87:f (2.66) BS01 rna ? GO:0000027 ... P05744 38632236
    824578 8v87:g (2.66) BS01 rna ? GO:0002181 ... P87262 38632236
    824579 8v87:g (2.66) BS02 ZN ? GO:0002181 ... P87262 38632236
    824580 8v87:h (2.66) BS01 rna ? GO:0000463 ... P0CX84 38632236
    824581 8v87:h (2.66) BS02 rna ? GO:0000463 ... P0CX84 38632236
    824582 8v87:i (2.66) BS01 rna ? GO:0002181 ... P05745 38632236
    824583 8v87:j (2.66) BS01 rna ? GO:0000448 ... P49166 38632236
    824584 8v87:j (2.66) BS02 rna ? GO:0000448 ... P49166 38632236
    824585 8v87:j (2.66) BS03 ZN ? GO:0000448 ... P49166 38632236
    824586 8v87:k (2.66) BS01 rna ? GO:0002181 ... P49167 38632236
    824587 8v87:l (2.66) BS01 rna ? GO:0000463 ... Q08962 38632236
    824588 8v87:m (2.66) BS01 rna ? GO:0000463 ... Q04660 38632236
    824589 8v87:m (2.66) BS02 rna ? GO:0000463 ... Q04660 38632236
    824590 8v87:n (2.66) BS01 rna ? GO:0000462 ... P53261 38632236
    824591 8v87:n (2.66) BS02 rna ? GO:0000462 ... P53261 38632236
    824592 8v87:o (2.66) BS01 rna ? GO:0000463 ... P53927 38632236
    824593 8v87:q (2.66) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    824594 8v87:r (2.66) BS01 rna ? GO:0000460 ... P40078 38632236
    824595 8v87:s (2.66) BS01 rna ? GO:0000055 ... P40010 38632236
    824596 8v87:t (2.66) BS01 rna ? GO:0000463 ... P40693 38632236
    824597 8v87:t (2.66) BS02 rna ? GO:0000463 ... P40693 38632236
    824598 8v87:t (2.66) BS03 rna ? GO:0000463 ... P40693 38632236
    824599 8v87:u (2.66) BS01 rna ? GO:0001671 ... Q07915 38632236
    824600 8v87:v (2.66) BS01 rna ? GO:0003674 ... P40007 38632236
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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