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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    824001 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824002 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    824003 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    824004 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    824005 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 N/A
    824006 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    824007 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    824008 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    824009 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    824010 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    824011 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    824012 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    824013 8v08:A (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    824014 8v08:B (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    824015 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824016 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824017 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    824018 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    824019 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    824020 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824021 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824022 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    824023 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    824024 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    824025 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824026 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    824027 8v14:A (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    824028 8v14:B (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    824029 8v15:A (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824030 8v15:A (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824031 8v15:A (2.4) BS03 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824032 8v15:C (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824033 8v15:C (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824034 8v15:C (2.4) BS03 Y4T 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824035 8v15:C (2.4) BS04 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824036 8v1f:B (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    824037 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 N/A
    824038 8v1f:D (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    824039 8v1j:A (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    824040 8v1j:A (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    824041 8v1j:A (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    824042 8v1j:A (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    824043 8v1j:B (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    824044 8v1j:B (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    824045 8v1j:B (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    824046 8v1j:B (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    824047 8v1l:A (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824048 8v1l:B (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824049 8v1l:C (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824050 8v1l:D (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824051 8v1l:E (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824052 8v1l:F (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    824053 8v1p:A (2.21) BS01 98C ? N/A Q8IVV7 N/A
    824054 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    824055 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    824056 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    824057 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    824058 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    824059 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    824060 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    824061 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    824062 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    824063 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    824064 8v2n:A (1.74) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824065 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824066 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    824067 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824068 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824069 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824070 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824071 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824072 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    824073 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    824074 8v2y:A (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    824075 8v2y:B (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    824076 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    824077 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    824078 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    824079 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    824080 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    824081 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824082 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824083 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824084 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824085 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824086 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824087 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824088 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824089 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824090 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824091 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824092 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824093 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    824094 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    824095 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 38420671
    824096 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0016829 ... Q9K499 38420671
    824097 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 38420671
    824098 8v4a:A (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    824099 8v4a:B (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    824100 8v4a:C (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    824101 8v4a:D (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    824102 8v4g:A (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    824103 8v4g:A (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    824104 8v4g:B (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    824105 8v4g:B (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    824106 8v4h:A (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    824107 8v4h:B (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    824108 8v4h:B (2.2) BS02 PO4 ? GO:0000166 ... A0A0U3AP28 38386885
    824109 8v4j:A (1.31) BS01 J7D 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    824110 8v4j:A (1.31) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    824111 8v4o:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824112 8v4o:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824113 8v4o:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824114 8v4p:A (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824115 8v4p:A (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824116 8v4p:B (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824117 8v4p:C (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824118 8v4p:C (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824119 8v4r:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824120 8v4r:A (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824121 8v4r:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824122 8v4r:B (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824123 8v4r:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824124 8v4r:C (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    824125 8v4u:A (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38687966
    824126 8v4u:B (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38687966
    824127 8v4x:A (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824128 8v4x:A (2.486) BS02 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824129 8v4x:A (2.486) BS03 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824130 8v4x:A (2.486) BS04 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824131 8v4x:B (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824132 8v4x:B (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824133 8v4x:C (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824134 8v4x:C (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824135 8v4x:D (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824136 8v4x:D (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824137 8v4x:E (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824138 8v4x:F (2.486) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    824139 8v4y:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    824140 8v4y:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    824141 8v4y:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    824142 8v4y:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    824143 8v4y:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    824144 8v4y:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    824145 8v4y:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    824146 8v4y:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    824147 8v4y:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    824148 8v4y:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    824149 8v4y:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    824150 8v4y:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    824151 8v4y:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    824152 8v4y:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    824153 8v4y:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    824154 8v4y:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    824155 8v4y:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    824156 8v4y:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    824157 8v4y:W (2.8) BS04 BEF 3.6.4.- GO:0000183 ... O60264 38472177
    824158 8v5g:A (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    824159 8v5g:B (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    824160 8v5m:A (9.22) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824161 8v5m:A (9.22) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824162 8v5m:D (9.22) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    824163 8v5n:A (8.56) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824164 8v5n:A (8.56) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824165 8v5n:D (8.56) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    824166 8v5o:A (8.99) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824167 8v5o:A (8.99) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824168 8v5o:D (8.99) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    824169 8v5y:A (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    824170 8v5y:B (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    824171 8v6g:A (11.16) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824172 8v6g:A (11.16) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824173 8v6g:A (11.16) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824174 8v6g:A (11.16) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824175 8v6g:A (11.16) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824176 8v6g:A (11.16) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824177 8v6g:C (11.16) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    824178 8v6g:C (11.16) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    824179 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    824180 8v6g:D (11.16) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    824181 8v6h:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824182 8v6h:A (11.11) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824183 8v6h:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824184 8v6h:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824185 8v6h:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824186 8v6h:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824187 8v6h:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    824188 8v6h:C (11.11) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    824189 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    824190 8v6h:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    824191 8v6i:A (14.06) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824192 8v6i:A (14.06) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824193 8v6i:A (14.06) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824194 8v6i:A (14.06) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824195 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824196 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    824197 8v6i:C (14.06) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    824198 8v6i:C (14.06) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    824199 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    824200 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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