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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    823001 8ury:V (3.1) BS01 rna ? GO:0000028 ... C3SQY7 39117885
    823002 8ury:W (3.1) BS01 rna ? GO:0000028 ... C3SQW2 39117885
    823003 8ury:X (3.1) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    823004 8ury:X (3.1) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    823005 8ury:Y (3.1) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    823006 8ury:b (3.1) BS01 rna ? GO:0003735 ... P0A7M0 39117885
    823007 8ury:b (3.1) BS02 rna ? GO:0003735 ... P0A7M0 39117885
    823008 8ury:c (3.1) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    823009 8ury:e (3.1) BS01 rna ? GO:0005840 ... P0A7M8 39117885
    823010 8ury:f (3.1) BS01 rna ? GO:0005840 ... C3SR32 39117885
    823011 8ury:f (3.1) BS02 rna ? GO:0005840 ... C3SR32 39117885
    823012 8ury:g (3.1) BS01 rna ? GO:0005840 ... P0A7N0 39117885
    823013 8ury:h (3.1) BS01 rna ? GO:0000027 ... P60422 39117885
    823014 8ury:i (3.1) BS01 rna ? GO:0005840 ... C3TE02 39117885
    823015 8ury:j (3.1) BS01 rna ? GO:0000027 ... P60438 39117885
    823016 8ury:k (3.1) BS01 rna ? GO:0003735 ... C3SME7 39117885
    823017 8ury:l (3.1) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    823018 8ury:m (3.1) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    823019 8ury:n (3.1) BS01 rna ? GO:0000049 ... A0A140N5A3 39117885
    823020 8ury:n (3.1) BS02 rna ? GO:0000049 ... A0A140N5A3 39117885
    823021 8ury:n (3.1) BS03 rna ? GO:0000049 ... A0A140N5A3 39117885
    823022 8ury:o (3.1) BS01 rna ? GO:0003735 ... P0A7Q2 39117885
    823023 8ury:p (3.1) BS01 rna ? GO:0002181 ... C3SR17 39117885
    823024 8ury:q (3.1) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    823025 8ury:r (3.1) BS01 rna ? GO:0005840 ... C3SFP2 39117885
    823026 8ury:s (3.1) BS01 rna ? GO:0003729 ... P0AA12 39117885
    823027 8ury:t (3.1) BS01 rna ? GO:0003735 ... S1NW45 39117885
    823028 8ury:t (3.1) BS02 rna ? GO:0003735 ... S1NW45 39117885
    823029 8ury:u (3.1) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    823030 8ury:v (3.1) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    823031 8ury:v (3.1) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    823032 8ury:w (3.1) BS01 rna ? GO:0003735 ... C3SR72 39117885
    823033 8ury:x (3.1) BS01 rna ? GO:0005737 ... A0A828U007 39117885
    823034 8ury:x (3.1) BS02 rna ? GO:0005737 ... A0A828U007 39117885
    823035 8ury:y (3.1) BS01 rna ? GO:0003735 ... P0A7K8 39117885
    823036 8ury:z (3.1) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    823037 8usf:A (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823038 8usf:B (1.45) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823039 8ush:A (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823040 8ush:B (1.32) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823041 8usj:A (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823042 8usj:B (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823043 8usj:C (1.6) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823044 8usl:A (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823045 8usl:B (1.55) BS01 6NT 3.2.1.8 GO:0004553 ... P23360 38532610
    823046 8usm:A (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    823047 8usm:B (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    823048 8usr:A (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    823049 8usr:A (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    823050 8usr:B (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    823051 8usr:B (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    823052 8usr:D (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    823053 8usr:D (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    823054 8uss:A (1.47) BS01 XCW ? GO:0002225 ... Q16552 38574366
    823055 8usu:A (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    823056 8usu:B (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    823057 8usw:A (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    823058 8usw:C (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    823059 8ut1:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823060 8ut1:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823061 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823062 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823063 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823064 8ut1:B (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823065 8ut1:B (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823066 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823067 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823068 8ut1:C (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823069 8ut1:C (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823070 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823071 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823072 8ut1:D (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823073 8ut1:D (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823074 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823075 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823076 8ut1:E (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823077 8ut1:E (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823078 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823079 8utb:A (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823080 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823081 8utb:A (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823082 8utb:A (2.3) BS04 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823083 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823084 8utb:B (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823085 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823086 8utb:B (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823087 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823088 8utb:B (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823089 8utb:C (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823090 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823091 8utb:C (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823092 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823093 8utb:C (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823094 8utb:D (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823095 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823096 8utb:D (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823097 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823098 8utb:D (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823099 8utb:E (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823100 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823101 8utb:E (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823102 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823103 8utb:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    823104 8ute:A (1.45) BS01 XKQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38365209
    823105 8utl:A (1.56) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    823106 8utl:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    823107 8utn:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823108 8utn:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823109 8utn:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823110 8utn:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823111 8utn:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823112 8utn:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823113 8utn:K (3.1) BS01 MG ? N/A Q12756 38956021
    823114 8utn:K (3.1) BS02 ANP ? N/A Q12756 38956021
    823115 8utn:N (3.1) BS01 ANP ? N/A Q12756 38956021
    823116 8utn:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823117 8uto:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823118 8uto:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823119 8uto:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823120 8uto:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823121 8uto:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823122 8uto:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823123 8uto:K (3.2) BS01 ANP ? N/A Q12756 38956021
    823124 8uto:N (3.2) BS01 ANP ? N/A Q12756 38956021
    823125 8uto:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823126 8utp:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823127 8utp:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823128 8utp:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823129 8utp:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823130 8utp:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823131 8utp:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823132 8utp:K (3.2) BS01 MG ? N/A Q12756 38956021
    823133 8utp:K (3.2) BS02 ANP ? N/A Q12756 38956021
    823134 8utp:N (3.2) BS01 ANP ? N/A Q12756 38956021
    823135 8utp:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823136 8utq:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823137 8utq:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823138 8utq:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823139 8utq:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823140 8utq:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823141 8utq:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823142 8utq:K (3.1) BS01 MG ? N/A Q12756 38956021
    823143 8utq:K (3.1) BS02 ANP ? N/A Q12756 38956021
    823144 8utr:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823145 8utr:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823146 8utr:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823147 8utr:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823148 8utr:K (3.3) BS01 ADP ? N/A Q12756 38956021
    823149 8uts:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823150 8uts:B (2.7) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823151 8uts:B (2.7) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823152 8utt:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823153 8utt:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823154 8utt:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823155 8utt:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823156 8utt:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823157 8utt:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823158 8utt:K (3.1) BS01 MG ? N/A Q12756 38956021
    823159 8utt:K (3.1) BS02 ANP ? N/A Q12756 38956021
    823160 8utt:N (3.1) BS01 ANP ? N/A Q12756 38956021
    823161 8utt:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823162 8utu:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823163 8utu:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823164 8utu:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823165 8utu:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823166 8utu:K (3.0) BS01 MG ? N/A Q12756 38956021
    823167 8utu:K (3.0) BS02 ANP ? N/A Q12756 38956021
    823168 8utv:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823169 8utv:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823170 8utv:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823171 8utv:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823172 8utv:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823173 8utv:E (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823174 8utv:K (3.0) BS01 ADP ? N/A Q12756 38956021
    823175 8utw:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823176 8utw:A (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823177 8utw:B (3.4) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823178 8utw:B (3.4) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823179 8uty:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823180 8uty:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823181 8uty:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823182 8uty:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823183 8uty:I (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    823184 8uty:I (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    823185 8uty:K (3.3) BS01 MG ? N/A Q12756 38956021
    823186 8uty:K (3.3) BS02 ANP ? N/A Q12756 38956021
    823187 8uty:N (3.3) BS01 ANP ? N/A Q12756 38956021
    823188 8uty:S (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    823189 8uu4:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    823190 8uu4:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    823191 8uu4:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    823192 8uu4:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    823193 8uu4:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    823194 8uu4:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    823195 8uu4:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    823196 8uu4:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    823197 8uu4:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    823198 8uu4:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    823199 8uu4:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    823200 8uu4:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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