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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    822801 8ur0:v (3.4) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822802 8ur0:v (3.4) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822803 8ur0:z (3.4) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822804 8ur2:B (1.9) BS01 PYR 5.3.2.1
    5.3.3.12    		 GO:0005125 ... A2DXT4 N/A
    822805 8ur9:A (2.3) BS01 XEK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38621119
    822806 8urb:A (3.4) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    822807 8urb:A (3.4) BS02 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    822808 8urb:A (3.4) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    822809 8urb:A (3.4) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0003723 ... U6BRU0 36993498
    822810 8urh:1 (5.7) BS01 rna ? GO:0002181 ... P61175 39117885
    822811 8urh:9 (5.7) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822812 8urh:AA (5.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822813 8urh:AA (5.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822814 8urh:AA (5.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822815 8urh:AB (5.7) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822816 8urh:AE (5.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822817 8urh:AE (5.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822818 8urh:AE (5.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822819 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822820 8urh:AE (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822821 8urh:AE (5.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822822 8urh:AF (5.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    822823 8urh:C (5.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822824 8urh:E (5.7) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822825 8urh:F (5.7) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822826 8urh:G (5.7) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822827 8urh:I (5.7) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822828 8urh:I (5.7) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822829 8urh:J (5.7) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822830 8urh:K (5.7) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822831 8urh:K (5.7) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822832 8urh:L (5.7) BS01 rna ? GO:0002181 ... P02358 39117885
    822833 8urh:M (5.7) BS01 rna ? GO:0000028 ... P02359 39117885
    822834 8urh:M (5.7) BS02 rna ? GO:0000028 ... P02359 39117885
    822835 8urh:Q (5.7) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822836 8urh:R (5.7) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822837 8urh:U (5.7) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822838 8urh:X (5.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822839 8urh:X (5.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822840 8urh:Y (5.7) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822841 8urh:b (5.7) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822842 8urh:b (5.7) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822843 8urh:c (5.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822844 8urh:g (5.7) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822845 8urh:h (5.7) BS01 rna ? GO:0000027 ... P60422 39117885
    822846 8urh:j (5.7) BS01 rna ? GO:0000027 ... P60438 39117885
    822847 8urh:l (5.7) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822848 8urh:m (5.7) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822849 8urh:o (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822850 8urh:p (5.7) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822851 8urh:q (5.7) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822852 8urh:t (5.7) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822853 8urh:t (5.7) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822854 8urh:u (5.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822855 8urh:v (5.7) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822856 8urh:v (5.7) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822857 8urh:z (5.7) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822858 8uri:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    822859 8uri:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822860 8uri:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822861 8uri:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822862 8uri:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822863 8uri:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822864 8uri:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822865 8uri:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822866 8uri:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822867 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822868 8uri:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822869 8uri:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822870 8uri:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822871 8uri:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822872 8uri:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822873 8uri:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822874 8uri:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822875 8uri:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822876 8uri:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822877 8uri:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822878 8uri:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822879 8uri:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    822880 8uri:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    822881 8uri:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    822882 8uri:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822883 8uri:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822884 8uri:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822885 8uri:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822886 8uri:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822887 8uri:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822888 8uri:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822889 8uri:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822890 8uri:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822891 8uri:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822892 8uri:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    822893 8uri:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    822894 8uri:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822895 8uri:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822896 8uri:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822897 8uri:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822898 8uri:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822899 8uri:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822900 8uri:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822901 8uri:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822902 8uri:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822903 8uri:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822904 8uri:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822905 8urw:C (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    822906 8urw:C (2.79) BS02 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    822907 8urw:C (2.79) BS03 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    822908 8urw:D (2.79) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    822909 8urw:D (2.79) BS02 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    822910 8urw:D (2.79) BS03 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    822911 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    822912 8urw:D (2.79) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    822913 8urw:G (2.79) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    822914 8urw:Z (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    822915 8urw:Z (2.79) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    822916 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    822917 8urx:1 (6.6) BS01 rna ? GO:0002181 ... P61175 39117885
    822918 8urx:9 (6.6) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822919 8urx:AA (6.6) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822920 8urx:AA (6.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822921 8urx:AA (6.6) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822922 8urx:AB (6.6) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822923 8urx:AE (6.6) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822924 8urx:AE (6.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822925 8urx:AE (6.6) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822926 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822927 8urx:AE (6.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822928 8urx:AE (6.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822929 8urx:C (6.6) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822930 8urx:E (6.6) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822931 8urx:F (6.6) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822932 8urx:G (6.6) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822933 8urx:I (6.6) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822934 8urx:I (6.6) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822935 8urx:J (6.6) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822936 8urx:K (6.6) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822937 8urx:K (6.6) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822938 8urx:L (6.6) BS01 rna ? GO:0002181 ... P02358 39117885
    822939 8urx:M (6.6) BS01 rna ? GO:0000028 ... P02359 39117885
    822940 8urx:M (6.6) BS02 rna ? GO:0000028 ... P02359 39117885
    822941 8urx:Q (6.6) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822942 8urx:R (6.6) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822943 8urx:U (6.6) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822944 8urx:X (6.6) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822945 8urx:X (6.6) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822946 8urx:Y (6.6) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822947 8urx:b (6.6) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822948 8urx:b (6.6) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822949 8urx:c (6.6) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822950 8urx:g (6.6) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822951 8urx:h (6.6) BS01 rna ? GO:0000027 ... P60422 39117885
    822952 8urx:j (6.6) BS01 rna ? GO:0000027 ... P60438 39117885
    822953 8urx:l (6.6) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822954 8urx:m (6.6) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822955 8urx:o (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822956 8urx:p (6.6) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822957 8urx:q (6.6) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822958 8urx:t (6.6) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822959 8urx:t (6.6) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822960 8urx:u (6.6) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822961 8urx:v (6.6) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822962 8urx:v (6.6) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822963 8urx:z (6.6) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822964 8ury:0 (3.1) BS01 rna ? GO:0003735 ... C3SSG2 39117885
    822965 8ury:1 (3.1) BS01 rna ? GO:0002181 ... P61175 39117885
    822966 8ury:2 (3.1) BS01 rna ? GO:0000027 ... C3SQV2 39117885
    822967 8ury:3 (3.1) BS01 rna ? GO:0005829 ... C3SQZ7 39117885
    822968 8ury:4 (3.1) BS01 rna ? GO:0000027 ... P68919 39117885
    822969 8ury:9 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822970 8ury:AA (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822971 8ury:AA (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822972 8ury:AA (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822973 8ury:AB (3.1) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822974 8ury:AE (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822975 8ury:AE (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822976 8ury:AE (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822977 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822978 8ury:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822979 8ury:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822980 8ury:C (3.1) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822981 8ury:E (3.1) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822982 8ury:F (3.1) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822983 8ury:G (3.1) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822984 8ury:I (3.1) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822985 8ury:I (3.1) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822986 8ury:J (3.1) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822987 8ury:K (3.1) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822988 8ury:K (3.1) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822989 8ury:L (3.1) BS01 rna ? N/A A0A376ZL25 39117885
    822990 8ury:M (3.1) BS01 rna ? GO:0000028 ... P02359 39117885
    822991 8ury:M (3.1) BS02 rna ? GO:0000028 ... P02359 39117885
    822992 8ury:N (3.1) BS01 rna ? GO:0000028 ... C3SR12 39117885
    822993 8ury:O (3.1) BS01 rna ? GO:0000028 ... C3SRY2 39117885
    822994 8ury:P (3.1) BS01 rna ? GO:0000049 ... P0A7R5 39117885
    822995 8ury:Q (3.1) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    822996 8ury:R (3.1) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822997 8ury:S (3.1) BS01 rna ? N/A A0A2X1PQW4 39117885
    822998 8ury:T (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 39117885
    822999 8ury:T (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 39117885
    823000 8ury:U (3.1) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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