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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    822601 8uql:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822602 8uql:AE (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822603 8uql:AE (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822604 8uql:AF (3.2) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    822605 8uql:C (3.2) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822606 8uql:E (3.2) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822607 8uql:F (3.2) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822608 8uql:G (3.2) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822609 8uql:I (3.2) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822610 8uql:I (3.2) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822611 8uql:J (3.2) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822612 8uql:K (3.2) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822613 8uql:K (3.2) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822614 8uql:L (3.2) BS01 rna ? GO:0002181 ... P02358 39117885
    822615 8uql:M (3.2) BS01 rna ? GO:0000028 ... P02359 39117885
    822616 8uql:M (3.2) BS02 rna ? GO:0000028 ... P02359 39117885
    822617 8uql:Q (3.2) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822618 8uql:R (3.2) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822619 8uql:U (3.2) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822620 8uql:X (3.2) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822621 8uql:X (3.2) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822622 8uql:Y (3.2) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822623 8uql:b (3.2) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822624 8uql:b (3.2) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822625 8uql:c (3.2) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822626 8uql:g (3.2) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822627 8uql:h (3.2) BS01 rna ? GO:0000027 ... P60422 39117885
    822628 8uql:j (3.2) BS01 rna ? GO:0000027 ... P60438 39117885
    822629 8uql:l (3.2) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822630 8uql:m (3.2) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822631 8uql:o (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822632 8uql:p (3.2) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822633 8uql:q (3.2) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822634 8uql:t (3.2) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822635 8uql:t (3.2) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822636 8uql:u (3.2) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822637 8uql:v (3.2) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822638 8uql:v (3.2) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822639 8uql:z (3.2) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822640 8uqm:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    822641 8uqm:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822642 8uqm:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822643 8uqm:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822644 8uqm:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822645 8uqm:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822646 8uqm:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822647 8uqm:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822648 8uqm:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822649 8uqm:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822650 8uqm:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822651 8uqm:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822652 8uqm:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822653 8uqm:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822654 8uqm:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822655 8uqm:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822656 8uqm:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822657 8uqm:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822658 8uqm:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822659 8uqm:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822660 8uqm:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822661 8uqm:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    822662 8uqm:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    822663 8uqm:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    822664 8uqm:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822665 8uqm:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822666 8uqm:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822667 8uqm:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822668 8uqm:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822669 8uqm:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822670 8uqm:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822671 8uqm:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822672 8uqm:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822673 8uqm:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822674 8uqm:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    822675 8uqm:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    822676 8uqm:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822677 8uqm:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822678 8uqm:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822679 8uqm:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822680 8uqm:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822681 8uqm:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822682 8uqm:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822683 8uqm:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822684 8uqm:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822685 8uqm:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822686 8uqm:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822687 8uqn:A (3.4) BS01 GDP ? GO:0001508 ... P50148 37991948
    822688 8uqn:A (3.4) BS02 ALF ? GO:0001508 ... P50148 37991948
    822689 8uqn:A (3.4) BS03 MG ? GO:0001508 ... P50148 37991948
    822690 8uqn:B (3.4) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    822691 8uqo:A (3.37) BS01 GDP ? GO:0001508 ... P50148 37991948
    822692 8uqo:A (3.37) BS02 ALF ? GO:0001508 ... P50148 37991948
    822693 8uqo:A (3.37) BS03 MG ? GO:0001508 ... P50148 37991948
    822694 8uqo:Q (3.37) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    822695 8uqp:1 (3.8) BS01 rna ? GO:0002181 ... P61175 39117885
    822696 8uqp:9 (3.8) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822697 8uqp:AA (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822698 8uqp:AA (3.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822699 8uqp:AA (3.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822700 8uqp:AB (3.8) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822701 8uqp:AE (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822702 8uqp:AE (3.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822703 8uqp:AE (3.8) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822704 8uqp:AE (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822705 8uqp:AE (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822706 8uqp:AE (3.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822707 8uqp:AF (3.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    822708 8uqp:C (3.8) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822709 8uqp:E (3.8) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822710 8uqp:F (3.8) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822711 8uqp:G (3.8) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822712 8uqp:I (3.8) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822713 8uqp:I (3.8) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822714 8uqp:J (3.8) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822715 8uqp:K (3.8) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822716 8uqp:K (3.8) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822717 8uqp:L (3.8) BS01 rna ? GO:0002181 ... P02358 39117885
    822718 8uqp:M (3.8) BS01 rna ? GO:0000028 ... P02359 39117885
    822719 8uqp:M (3.8) BS02 rna ? GO:0000028 ... P02359 39117885
    822720 8uqp:Q (3.8) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822721 8uqp:R (3.8) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822722 8uqp:U (3.8) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822723 8uqp:X (3.8) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822724 8uqp:X (3.8) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822725 8uqp:Y (3.8) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822726 8uqp:b (3.8) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822727 8uqp:b (3.8) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822728 8uqp:c (3.8) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822729 8uqp:g (3.8) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822730 8uqp:h (3.8) BS01 rna ? GO:0000027 ... P60422 39117885
    822731 8uqp:j (3.8) BS01 rna ? GO:0000027 ... P60438 39117885
    822732 8uqp:l (3.8) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822733 8uqp:m (3.8) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822734 8uqp:o (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822735 8uqp:p (3.8) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822736 8uqp:q (3.8) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822737 8uqp:t (3.8) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822738 8uqp:t (3.8) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822739 8uqp:u (3.8) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    822740 8uqp:v (3.8) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    822741 8uqp:v (3.8) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    822742 8uqp:z (3.8) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    822743 8uqv:A (3.6) BS01 GLC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822744 8uqv:A (3.6) BS02 XVC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822745 8uqv:A (3.6) BS03 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822746 8uqv:B (3.6) BS01 GLC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822747 8uqv:B (3.6) BS02 XVC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822748 8uqv:B (3.6) BS03 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822749 8uqv:C (3.6) BS01 GLC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822750 8uqv:C (3.6) BS02 XVC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822751 8uqv:C (3.6) BS03 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822752 8uqv:D (3.6) BS01 GLC 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822753 8uqv:D (3.6) BS02 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19 38485491
    822754 8uqy:A (1.78) BS01 EU3 ? GO:0008270 ... A0A060GYS7 38512071
    822755 8uqz:A (1.61) BS01 GD3 ? GO:0008270 ... A0A060GYS7 38512071
    822756 8ur0:1 (3.4) BS01 rna ? GO:0002181 ... P61175 39117885
    822757 8ur0:9 (3.4) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    822758 8ur0:AA (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822759 8ur0:AA (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822760 8ur0:AA (3.4) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    822761 8ur0:AB (3.4) BS01 dna ? GO:0001073 ... C3SK02 39117885
    822762 8ur0:AE (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822763 8ur0:AE (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822764 8ur0:AE (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822765 8ur0:AE (3.4) BS04 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822766 8ur0:AE (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822767 8ur0:AE (3.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822768 8ur0:AE (3.4) BS07 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    822769 8ur0:C (3.4) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    822770 8ur0:E (3.4) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    822771 8ur0:F (3.4) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    822772 8ur0:G (3.4) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    822773 8ur0:I (3.4) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    822774 8ur0:I (3.4) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    822775 8ur0:J (3.4) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    822776 8ur0:K (3.4) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    822777 8ur0:K (3.4) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    822778 8ur0:L (3.4) BS01 rna ? GO:0002181 ... P02358 39117885
    822779 8ur0:M (3.4) BS01 rna ? GO:0000028 ... P02359 39117885
    822780 8ur0:M (3.4) BS02 rna ? GO:0000028 ... P02359 39117885
    822781 8ur0:Q (3.4) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    822782 8ur0:R (3.4) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    822783 8ur0:U (3.4) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    822784 8ur0:X (3.4) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822785 8ur0:X (3.4) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    822786 8ur0:Y (3.4) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    822787 8ur0:b (3.4) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    822788 8ur0:b (3.4) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    822789 8ur0:c (3.4) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    822790 8ur0:g (3.4) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    822791 8ur0:h (3.4) BS01 rna ? GO:0000027 ... P60422 39117885
    822792 8ur0:j (3.4) BS01 rna ? GO:0000027 ... P60438 39117885
    822793 8ur0:l (3.4) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    822794 8ur0:m (3.4) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    822795 8ur0:o (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    822796 8ur0:p (3.4) BS01 rna ? GO:0002181 ... C3SR17 39117885
    822797 8ur0:q (3.4) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    822798 8ur0:t (3.4) BS01 rna ? GO:0003735 ... S1NW45 39117885
    822799 8ur0:t (3.4) BS02 rna ? GO:0003735 ... S1NW45 39117885
    822800 8ur0:u (3.4) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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