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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    822001 8uk4:A (3.02) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    822002 8uk4:A (3.02) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    822003 8uk5:A (1.4) BS01 peptide ? N/A Q9ULI0 38733345
    822004 8uk6:A (2.73) BS01 ZN 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    822005 8uk6:A (2.73) BS02 WVK 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    822006 8uk9:A (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    822007 8uk9:B (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822008 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822009 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822010 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822011 8uk9:C (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822012 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822013 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822014 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822015 8uk9:D (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822016 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822017 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822018 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822019 8uk9:E (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822020 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822021 8uk9:K (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822022 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822023 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822024 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822025 8uk9:L (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822026 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822027 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822028 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822029 8uk9:M (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822030 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    822031 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    822032 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822033 8uk9:N (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    822034 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    822035 8uk9:Q (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    822036 8uk9:Q (3.1) BS02 dna ? GO:0003677 ... P04527 38177685
    822037 8uke:A (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822038 8uke:A (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822039 8uke:A (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822040 8uke:B (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822041 8uke:B (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822042 8uke:B (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822043 8uke:C (2.4) BS01 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822044 8uke:C (2.4) BS02 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822045 8uke:C (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822046 8uke:D (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822047 8uke:D (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822048 8uke:E (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822049 8uke:E (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822050 8uke:E (2.4) BS03 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822051 8uke:F (2.4) BS01 SAH 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822052 8uke:F (2.4) BS02 CA 2.1.1.336 GO:0008168 ... A0A077EWA5 38453941
    822053 8ukq:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822054 8ukq:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822055 8ukq:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822056 8ukq:A (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822057 8ukq:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    822058 8ukq:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    822059 8ukq:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    822060 8ukq:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    822061 8ukq:C (3.5) BS01 ZN ? GO:0000428 ... P16370 38393762
    822062 8ukq:I (3.5) BS01 ZN ? GO:0000428 ... P27999 38393762
    822063 8ukq:I (3.5) BS02 ZN ? GO:0000428 ... P27999 38393762
    822064 8ukq:J (3.5) BS01 ZN ? GO:0000428 ... P22139 38393762
    822065 8ukq:L (3.5) BS01 ZN ? GO:0000428 ... P40422 38393762
    822066 8ukr:A (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    822067 8ukr:A (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822068 8ukr:A (3.78) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822069 8ukr:A (3.78) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822070 8ukr:A (3.78) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822071 8ukr:A (3.78) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    822072 8ukr:B (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    822073 8ukr:B (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    822074 8ukr:B (3.78) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    822075 8ukr:B (3.78) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 38393762
    822076 8ukr:C (3.78) BS01 ZN ? GO:0000428 ... P16370 38393762
    822077 8ukr:I (3.78) BS01 ZN ? GO:0000428 ... P27999 38393762
    822078 8ukr:I (3.78) BS02 ZN ? GO:0000428 ... P27999 38393762
    822079 8ukr:J (3.78) BS01 ZN ? GO:0000428 ... P22139 38393762
    822080 8ukr:L (3.78) BS01 ZN ? GO:0000428 ... P40422 38393762
    822081 8uks:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    822082 8uks:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822083 8uks:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822084 8uks:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822085 8uks:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822086 8uks:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    822087 8uks:A (3.4) BS07 CTP 2.7.7.6 GO:0000428 ... P04050 38393762
    822088 8uks:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    822089 8uks:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    822090 8uks:B (3.4) BS03 CTP 2.7.7.6 GO:0000428 ... P08518 38393762
    822091 8uks:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    822092 8uks:C (3.4) BS01 ZN ? GO:0000428 ... P16370 38393762
    822093 8uks:I (3.4) BS01 ZN ? GO:0000428 ... P27999 38393762
    822094 8uks:I (3.4) BS02 ZN ? GO:0000428 ... P27999 38393762
    822095 8uks:J (3.4) BS01 ZN ? GO:0000428 ... P22139 38393762
    822096 8uks:L (3.4) BS01 ZN ? GO:0000428 ... P40422 38393762
    822097 8ukt:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    822098 8ukt:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822099 8ukt:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822100 8ukt:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    822101 8ukt:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822102 8ukt:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822103 8ukt:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    822104 8ukt:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    822105 8ukt:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    822106 8ukt:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    822107 8ukt:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    822108 8ukt:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    822109 8ukt:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    822110 8ukt:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    822111 8uku:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    822112 8uku:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822113 8uku:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    822114 8uku:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822115 8uku:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    822116 8uku:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    822117 8uku:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    822118 8uku:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    822119 8uku:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    822120 8uku:B (3.6) BS04 POP 2.7.7.6 GO:0000428 ... P08518 38393762
    822121 8uku:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    822122 8uku:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    822123 8uku:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    822124 8uku:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    822125 8uku:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    822126 8ukz:A (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822127 8ukz:A (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822128 8ukz:A (1.95) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822129 8ukz:B (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822130 8ukz:B (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822131 8ukz:C (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822132 8ukz:C (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    822133 8uld:A (1.8) BS01 WYR 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 38309201
    822134 8ulg:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    822135 8ulg:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    822136 8ulg:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    822137 8ulg:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    822138 8um3:A (1.925) BS01 W41 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    822139 8um6:B (1.95) BS01 CU ? N/A P94431 38342077
    822140 8umc:A (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    822141 8umc:C (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    822142 8umo:A (2.6) BS01 peptide ? N/A P06339 38158698
    822143 8umo:K (2.6) BS01 peptide ? N/A Q9WU32 38158698
    822144 8umt:B (3.33) BS01 AGS ? GO:0003677 ... P35250 38669181
    822145 8umt:C (3.33) BS01 MG ? GO:0003677 ... P40937 38669181
    822146 8umt:C (3.33) BS02 AGS ? GO:0003677 ... P40937 38669181
    822147 8umt:D (3.33) BS01 AGS ? GO:0003677 ... P35249 38669181
    822148 8umt:E (3.33) BS01 ADP ? GO:0000731 ... P40938 38669181
    822149 8umu:A (3.16) BS01 AGS ? GO:0003677 ... Q8WVB6 38669181
    822150 8umu:B (3.16) BS01 AGS ? GO:0003677 ... P35250 38669181
    822151 8umu:B (3.16) BS02 AGS ? GO:0003677 ... P35250 38669181
    822152 8umu:C (3.16) BS01 AGS ? GO:0003677 ... P40937 38669181
    822153 8umu:E (3.16) BS01 ADP ? GO:0000731 ... P40938 38669181
    822154 8umv:A (2.75) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    822155 8umv:A (2.75) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    822156 8umv:A (2.75) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    822157 8umv:B (2.75) BS01 dna ? GO:0003677 ... P35250 38669181
    822158 8umv:B (2.75) BS02 AGS ? GO:0003677 ... P35250 38669181
    822159 8umv:B (2.75) BS03 AGS ? GO:0003677 ... P35250 38669181
    822160 8umv:C (2.75) BS01 dna ? GO:0003677 ... P40937 38669181
    822161 8umv:C (2.75) BS02 AGS ? GO:0003677 ... P40937 38669181
    822162 8umv:C (2.75) BS03 AGS ? GO:0003677 ... P40937 38669181
    822163 8umv:D (2.75) BS01 dna ? GO:0003677 ... P35249 38669181
    822164 8umv:D (2.75) BS02 AGS ? GO:0003677 ... P35249 38669181
    822165 8umv:D (2.75) BS03 AGS ? GO:0003677 ... P35249 38669181
    822166 8umv:E (2.75) BS01 dna ? GO:0000731 ... P40938 38669181
    822167 8umv:E (2.75) BS02 AGS ? GO:0000731 ... P40938 38669181
    822168 8umv:E (2.75) BS03 ADP ? GO:0000731 ... P40938 38669181
    822169 8umw:A (2.93) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    822170 8umw:A (2.93) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    822171 8umw:A (2.93) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    822172 8umw:B (2.93) BS01 AGS ? GO:0003677 ... P35250 38669181
    822173 8umw:B (2.93) BS02 AGS ? GO:0003677 ... P35250 38669181
    822174 8umw:C (2.93) BS01 dna ? GO:0003677 ... P40937 38669181
    822175 8umw:C (2.93) BS02 AGS ? GO:0003677 ... P40937 38669181
    822176 8umw:C (2.93) BS03 AGS ? GO:0003677 ... P40937 38669181
    822177 8umw:D (2.93) BS01 dna ? GO:0003677 ... P35249 38669181
    822178 8umw:D (2.93) BS02 AGS ? GO:0003677 ... P35249 38669181
    822179 8umw:D (2.93) BS03 MG ? GO:0003677 ... P35249 38669181
    822180 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    822181 8umw:E (2.93) BS01 dna ? GO:0000731 ... P40938 38669181
    822182 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    822183 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    822184 8umy:A (2.83) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    822185 8umy:A (2.83) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    822186 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    822187 8umy:B (2.83) BS01 dna ? GO:0003677 ... P35250 38669181
    822188 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    822189 8umy:B (2.83) BS03 MG ? GO:0003677 ... P35250 38669181
    822190 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    822191 8umy:C (2.83) BS01 dna ? GO:0003677 ... P40937 38669181
    822192 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    822193 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    822194 8umy:D (2.83) BS01 dna ? GO:0003677 ... P35249 38669181
    822195 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    822196 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    822197 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    822198 8umy:E (2.83) BS01 dna ? GO:0000731 ... P40938 38669181
    822199 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    822200 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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