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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821601 8uh4:E (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821602 8uh4:E (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821603 8uh4:F (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821604 8uh4:F (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821605 8uh4:G (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821606 8uh4:G (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821607 8uh4:H (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821608 8uh4:H (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821609 8uh4:I (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821610 8uh4:I (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821611 8uh4:J (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821612 8uh4:J (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821613 8uh4:K (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821614 8uh4:K (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821615 8uh4:L (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821616 8uh4:L (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821617 8uh4:M (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821618 8uh4:M (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821619 8uh4:N (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821620 8uh4:N (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821621 8uh4:O (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821622 8uh4:O (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821623 8uh4:P (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821624 8uh4:P (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821625 8uh4:Q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821626 8uh4:Q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821627 8uh4:R (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821628 8uh4:R (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821629 8uh4:S (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821630 8uh4:S (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821631 8uh4:T (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821632 8uh4:T (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821633 8uh4:U (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821634 8uh4:U (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821635 8uh4:V (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821636 8uh4:V (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821637 8uh4:W (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821638 8uh4:W (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821639 8uh4:X (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821640 8uh4:X (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821641 8uh4:Y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821642 8uh4:Y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821643 8uh4:Z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821644 8uh4:Z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821645 8uh4:a (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821646 8uh4:a (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821647 8uh4:b (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821648 8uh4:b (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821649 8uh4:c (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821650 8uh4:c (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821651 8uh4:d (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821652 8uh4:d (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821653 8uh4:e (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821654 8uh4:e (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821655 8uh4:f (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821656 8uh4:f (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821657 8uh4:g (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821658 8uh4:g (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821659 8uh4:h (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821660 8uh4:h (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821661 8uh4:i (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821662 8uh4:i (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821663 8uh4:j (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821664 8uh4:j (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821665 8uh4:k (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821666 8uh4:k (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821667 8uh4:l (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821668 8uh4:l (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821669 8uh4:m (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821670 8uh4:m (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821671 8uh4:n (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821672 8uh4:n (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821673 8uh4:o (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821674 8uh4:o (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821675 8uh4:p (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821676 8uh4:p (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821677 8uh4:q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821678 8uh4:q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821679 8uh4:r (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821680 8uh4:r (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821681 8uh4:s (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821682 8uh4:s (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821683 8uh4:t (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821684 8uh4:t (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821685 8uh4:u (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821686 8uh4:u (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821687 8uh4:v (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821688 8uh4:v (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821689 8uh4:w (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821690 8uh4:w (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821691 8uh4:x (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821692 8uh4:x (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821693 8uh4:y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821694 8uh4:y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821695 8uh4:z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821696 8uh4:z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821697 8uh5:A (1.74) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    821698 8uh7:A (2.628) BS01 dna ? GO:0003677 ... P04527 38177685
    821699 8uh7:B (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    821700 8uh7:B (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    821701 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    821702 8uh7:C (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    821703 8uh7:C (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    821704 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    821705 8uh7:D (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    821706 8uh7:D (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    821707 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    821708 8uh7:E (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    821709 8uh7:E (2.628) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    821710 8uh9:A (2.067) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    821711 8uha:A (3.5) BS01 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821712 8uha:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821713 8uha:A (3.5) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821714 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821715 8uha:A (3.5) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821716 8uha:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821717 8uha:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821718 8uha:B (3.5) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821719 8uha:B (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821720 8uha:C (3.5) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    821721 8uha:I (3.5) BS01 ZN ? GO:0000428 ... P60899 38401543
    821722 8uha:I (3.5) BS02 ZN ? GO:0000428 ... P60899 38401543
    821723 8uha:J (3.5) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    821724 8uha:L (3.5) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    821725 8uha:V (3.5) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    821726 8uhb:A (3.35) BS01 WV8 ? GO:0001594 ... P07550
    P0ABE7
    Q96RJ0    		 38168118
    821727 8uhd:A (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821728 8uhd:A (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821729 8uhd:A (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821730 8uhd:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821731 8uhd:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821732 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821733 8uhd:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    821734 8uhd:B (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    821735 8uhd:B (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    821736 8uhd:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    821737 8uhd:C (2.8) BS01 ZN ? GO:0003677 ... A0A481DF93 38401543
    821738 8uhd:E (2.8) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38401543
    821739 8uhd:I (2.8) BS01 ZN ? GO:0000428 ... P60899 38401543
    821740 8uhd:I (2.8) BS02 ZN ? GO:0000428 ... P60899 38401543
    821741 8uhd:J (2.8) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    821742 8uhd:L (2.8) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    821743 8uhd:V (2.8) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    821744 8uhe:B (2.78) BS01 M1V ? GO:0009579 ... B4WKI8 38141759
    821745 8uhe:C (2.78) BS01 M1V ? GO:0009579 ... B4WKI4 38141759
    821746 8uhe:C (2.78) BS02 M1V ? GO:0009579 ... B4WKI4 38141759
    821747 8uhe:J (2.78) BS01 M1V ? GO:0009579 ... B4WIH2 38141759
    821748 8uhe:K (2.78) BS01 M1V ? GO:0009579 ... B4WKI6 38141759
    821749 8uhg:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821750 8uhg:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821751 8uhg:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821752 8uhg:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821753 8uhg:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821754 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821755 8uhg:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821756 8uhg:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821757 8uhg:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821758 8uhg:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    821759 8uhg:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    821760 8uhg:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    821761 8uhg:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    821762 8uhg:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    821763 8uhi:A (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821764 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821765 8uhi:B (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821766 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821767 8uhi:C (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821768 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821769 8uhi:D (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821770 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821771 8uhi:E (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821772 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821773 8uhi:F (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821774 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821775 8uhi:G (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821776 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821777 8uhi:H (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821778 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    821779 8uhl:A (1.92) BS01 peptide ? N/A Q9ULI0 38733345
    821780 8uhl:A (1.92) BS02 peptide ? N/A Q9ULI0 38733345
    821781 8uho:A (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    821782 8uho:B (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    821783 8uhz:A (2.55) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    821784 8uhz:A (2.55) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    821785 8ui0:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821786 8ui0:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821787 8ui0:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821788 8ui0:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821789 8ui0:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821790 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    821791 8ui0:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821792 8ui0:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821793 8ui0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    821794 8ui0:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    821795 8ui0:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    821796 8ui0:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    821797 8ui0:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    821798 8ui0:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    821799 8ui1:A (2.91) BS01 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    821800 8ui1:A (2.91) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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