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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    820601 8ud6:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    820602 8ud6:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    820603 8ud6:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 38359125
    820604 8ud6:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    820605 8ud6:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 38359125
    820606 8ud6:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    820607 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    820608 8ud6:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    820609 8ud6:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    820610 8ud6:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    820611 8ud6:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    820612 8ud6:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    820613 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    820614 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    820615 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    820616 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    820617 8ud6:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    820618 8ud6:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    820619 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    820620 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    820621 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    820622 8ud6:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    820623 8ud6:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    820624 8ud6:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    820625 8ud6:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    820626 8ud6:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    820627 8ud6:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    820628 8ud6:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    820629 8ud6:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    820630 8ud6:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    820631 8ud6:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    820632 8ud6:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    820633 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    820634 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    820635 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    820636 8ud6:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    820637 8ud6:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    820638 8ud6:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    820639 8ud6:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    820640 8ud6:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    820641 8ud6:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    820642 8ud6:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    820643 8ud6:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    820644 8ud6:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    820645 8ud6:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    820646 8ud6:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    820647 8ud6:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    820648 8ud6:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    820649 8ud6:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    820650 8ud6:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    820651 8ud6:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    820652 8ud6:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    820653 8ud6:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    820654 8ud6:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    820655 8ud6:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    820656 8ud6:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38359125
    820657 8ud6:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38359125
    820658 8ud6:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    820659 8ud6:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    820660 8ud6:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    820661 8ud6:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    820662 8ud6:2g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    820663 8ud6:2g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    820664 8ud6:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    820665 8ud6:2i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    820666 8ud6:2i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    820667 8ud6:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    820668 8ud6:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    820669 8ud6:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    820670 8ud6:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    820671 8ud6:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    820672 8ud6:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    820673 8ud6:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    820674 8ud6:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    820675 8ud6:2m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    820676 8ud6:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    820677 8ud6:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    820678 8ud6:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    820679 8ud6:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    820680 8ud6:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    820681 8ud6:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    820682 8ud6:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    820683 8ud6:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    820684 8ud6:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    820685 8ud6:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    820686 8ud6:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    820687 8ud7:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    820688 8ud7:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    820689 8ud7:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38359125
    820690 8ud7:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38359125
    820691 8ud7:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    820692 8ud7:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38359125
    820693 8ud7:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    820694 8ud7:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    820695 8ud7:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    820696 8ud7:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    820697 8ud7:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    820698 8ud7:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    820699 8ud7:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    820700 8ud7:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    820701 8ud7:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    820702 8ud7:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38359125
    820703 8ud7:15 (2.55) BS04 ZN ? GO:0003735 ... P80339 38359125
    820704 8ud7:16 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    820705 8ud7:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38359125
    820706 8ud7:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38359125
    820707 8ud7:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    820708 8ud7:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    820709 8ud7:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    820710 8ud7:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    820711 8ud7:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    820712 8ud7:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    820713 8ud7:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    820714 8ud7:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    820715 8ud7:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    820716 8ud7:1D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    820717 8ud7:1D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    820718 8ud7:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    820719 8ud7:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    820720 8ud7:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    820721 8ud7:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    820722 8ud7:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    820723 8ud7:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38359125
    820724 8ud7:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38359125
    820725 8ud7:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38359125
    820726 8ud7:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38359125
    820727 8ud7:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38359125
    820728 8ud7:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    820729 8ud7:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    820730 8ud7:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    820731 8ud7:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    820732 8ud7:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    820733 8ud7:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    820734 8ud7:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    820735 8ud7:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    820736 8ud7:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    820737 8ud7:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    820738 8ud7:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    820739 8ud7:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    820740 8ud7:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    820741 8ud7:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    820742 8ud7:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    820743 8ud7:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38359125
    820744 8ud7:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38359125
    820745 8ud7:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38359125
    820746 8ud7:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    820747 8ud7:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    820748 8ud7:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    820749 8ud7:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    820750 8ud7:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    820751 8ud7:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    820752 8ud7:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    820753 8ud7:1N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    820754 8ud7:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38359125
    820755 8ud7:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38359125
    820756 8ud7:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    820757 8ud7:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    820758 8ud7:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    820759 8ud7:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    820760 8ud7:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    820761 8ud7:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    820762 8ud7:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    820763 8ud7:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    820764 8ud7:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    820765 8ud7:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    820766 8ud7:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    820767 8ud7:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    820768 8ud7:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    820769 8ud7:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    820770 8ud7:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    820771 8ud7:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    820772 8ud7:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38359125
    820773 8ud7:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38359125
    820774 8ud7:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    820775 8ud7:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    820776 8ud7:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    820777 8ud7:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    820778 8ud7:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    820779 8ud7:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    820780 8ud7:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    820781 8ud7:1T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    820782 8ud7:1T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    820783 8ud7:1U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    820784 8ud7:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    820785 8ud7:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38359125
    820786 8ud7:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38359125
    820787 8ud7:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38359125
    820788 8ud7:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38359125
    820789 8ud7:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38359125
    820790 8ud7:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38359125
    820791 8ud7:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38359125
    820792 8ud7:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38359125
    820793 8ud7:1U (2.55) BS11 MG ? GO:0000027 ... P60491 38359125
    820794 8ud7:1V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    820795 8ud7:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    820796 8ud7:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38359125
    820797 8ud7:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38359125
    820798 8ud7:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38359125
    820799 8ud7:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38359125
    820800 8ud7:1V (2.55) BS07 MG ? GO:0003723 ... P60492 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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