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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    820201 8u8q:B (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820202 8u8q:B (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820203 8u8q:B (2.7) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820204 8u8q:B (2.7) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    820205 8u8q:C (2.7) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820206 8u8q:C (2.7) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    820207 8u8q:C (2.7) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    820208 8u8q:C (2.7) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    820209 8u8q:C (2.7) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    820210 8u8q:C (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820211 8u8q:C (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820212 8u8q:C (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820213 8u8q:C (2.7) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820214 8u8r:A (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820215 8u8r:A (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820216 8u8r:A (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820217 8u8r:A (2.86) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    820218 8u8r:A (2.86) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820219 8u8r:A (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820220 8u8r:A (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820221 8u8r:A (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820222 8u8r:A (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    820223 8u8r:A (2.86) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    820224 8u8r:B (2.86) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    820225 8u8r:B (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820226 8u8r:B (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820227 8u8r:B (2.86) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    820228 8u8r:B (2.86) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820229 8u8r:B (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820230 8u8r:B (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820231 8u8r:B (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820232 8u8r:B (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    820233 8u8r:C (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820234 8u8r:C (2.86) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    820235 8u8r:C (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820236 8u8r:C (2.86) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    820237 8u8r:C (2.86) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    820238 8u8r:C (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820239 8u8r:C (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820240 8u8r:C (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820241 8u8r:C (2.86) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820242 8u8s:A (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820243 8u8s:A (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820244 8u8s:A (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820245 8u8s:A (2.63) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    820246 8u8s:A (2.63) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820247 8u8s:A (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820248 8u8s:A (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820249 8u8s:A (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820250 8u8s:A (2.63) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    820251 8u8s:A (2.63) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    820252 8u8s:B (2.63) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    820253 8u8s:B (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820254 8u8s:B (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820255 8u8s:B (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    820256 8u8s:B (2.63) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820257 8u8s:B (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820258 8u8s:B (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820259 8u8s:B (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820260 8u8s:B (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820261 8u8s:B (2.63) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    820262 8u8s:C (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820263 8u8s:C (2.63) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    820264 8u8s:C (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820265 8u8s:C (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    820266 8u8s:C (2.63) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    820267 8u8s:C (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820268 8u8s:C (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820269 8u8s:C (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820270 8u8s:C (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820271 8u8t:A (2.9) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    820272 8u8t:A (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820273 8u8t:A (2.9) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    820274 8u8t:A (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    820275 8u8t:A (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820276 8u8t:A (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820277 8u8t:A (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820278 8u8t:A (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820279 8u8t:A (2.9) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    820280 8u8t:A (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    820281 8u8t:B (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    820282 8u8t:B (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820283 8u8t:B (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820284 8u8t:B (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    820285 8u8t:B (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    820286 8u8t:B (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820287 8u8t:B (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820288 8u8t:B (2.9) BS08 CU ? GO:0005507 ... Q9XAL8 37926680
    820289 8u8t:C (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    820290 8u8t:C (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    820291 8u8t:C (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    820292 8u8t:C (2.9) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    820293 8u8t:C (2.9) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    820294 8u8t:C (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    820295 8u8t:C (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    820296 8u8t:C (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    820297 8u8t:C (2.9) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    820298 8u8t:C (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    820299 8u8w:A (1.8) BS01 PYR 4.1.3.3 GO:0005737 ... A0A0H3FJT8 N/A
    820300 8u8x:A (1.69) BS01 W9N 2.7.10.1 N/A P04626 38820338
    820301 8u8y:A (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820302 8u8y:A (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820303 8u8y:B (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820304 8u8y:B (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820305 8u8y:C (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820306 8u8y:C (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820307 8u8y:D (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820308 8u8y:D (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820309 8u8y:E (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820310 8u8y:E (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820311 8u8y:F (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820312 8u8y:F (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820313 8u8y:G (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820314 8u8y:G (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820315 8u8y:H (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    820316 8u8y:H (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    820317 8u94:A (1.4) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    820318 8u96:A (1.5) BS01 ATP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    820319 8u97:A (1.5) BS01 ANP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    820320 8u98:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820321 8u98:A (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820322 8u98:A (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820323 8u98:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820324 8u98:B (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820325 8u98:B (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820326 8u98:C (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820327 8u98:C (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820328 8u98:C (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820329 8u98:D (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820330 8u98:D (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820331 8u98:D (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820332 8u99:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820333 8u99:A (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820334 8u99:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820335 8u99:B (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    820336 8u9a:A (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    820337 8u9a:A (1.5) BS02 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    820338 8u9a:B (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    820339 8u9f:A (1.08) BS01 MG ? GO:0004553 ... Q8A889 38879612
    820340 8u9g:A (2.87) BS01 peptide ? N/A A0A140T913 38113889
    820341 8u9g:D (2.87) BS01 peptide ? N/A A0A140T913 38113889
    820342 8u9o:B (-1.00) BS01 peptide ? N/A A3DC20 38597224
    820343 8uab:A (1.781) BS01 W28 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38181791
    820344 8uac:A (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    820345 8uac:B (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    820346 8uak:A (2.82) BS01 W39 2.7.11.13 GO:0004672 ... P17252 38198520
    820347 8uap:A (2.5) BS01 W2T 2.7.11.16 GO:0004672 ... P34947 38016297
    820348 8uaq:A (2.8) BS01 W3F 2.7.11.16 GO:0004672 ... P34947 38016297
    820349 8ubr:A (2.7) BS01 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    820350 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    820351 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    820352 8ubr:A (2.7) BS04 LBN 5.6.1.6 GO:0005254 ... P13569 38422021
    820353 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    820354 8ubr:A (2.7) BS06 WG5 5.6.1.6 GO:0005254 ... P13569 38422021
    820355 8ubr:A (2.7) BS07 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    820356 8ubw:A (2.59) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820357 8ubw:A (2.59) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820358 8ubw:A (2.59) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820359 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    820360 8ubx:A (2.5) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38693265
    820361 8ubx:A (2.5) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820362 8ubx:A (2.5) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820363 8ubx:A (2.5) BS04 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820364 8uby:A (2.67) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820365 8uby:A (2.67) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820366 8uby:A (2.67) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820367 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    820368 8ubz:A (3.02) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820369 8ubz:A (3.02) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820370 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    820371 8uc0:A (2.42) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820372 8uc0:A (2.42) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    820373 8uc2:A (1.6) BS01 BEZ 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    820374 8uc2:A (1.6) BS02 CA 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 38577885
    820375 8uc3:A (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    820376 8uc3:A (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    820377 8uc3:B (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    820378 8uc3:B (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    820379 8uc6:B (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    820380 8uc6:C (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    820381 8uc9:A (2.44) BS01 QBC ? GO:0005085 ... Q07890 38156904
    820382 8ucd:A (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    820383 8ucd:A (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    820384 8ucd:A (3.0) BS03 LBN ? GO:0005515 ... Q9UHE8 37861452
    820385 8ucd:A (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    820386 8ucd:B (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    820387 8ucd:B (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    820388 8ucd:B (3.0) BS03 HEM ? GO:0005515 ... Q9UHE8 37861452
    820389 8ucd:C (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    820390 8ucd:C (3.0) BS02 LBN ? GO:0005515 ... Q9UHE8 37861452
    820391 8ucd:C (3.0) BS03 FAD ? GO:0005515 ... Q9UHE8 37861452
    820392 8ucd:C (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    820393 8uce:A (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    820394 8uce:A (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    820395 8uce:B (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    820396 8uce:B (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    820397 8ucf:A (1.9) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    820398 8ucg:A (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    820399 8ucg:A (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    820400 8ucg:A (1.86) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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