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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    819601 8u14:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    819602 8u14:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    819603 8u14:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    819604 8u14:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    819605 8u14:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    819606 8u14:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    819607 8u14:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    819608 8u14:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    819609 8u14:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    819610 8u14:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    819611 8u14:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    819612 8u14:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    819613 8u14:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    819614 8u14:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    819615 8u14:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    819616 8u14:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    819617 8u14:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    819618 8u15:A (2.95) BS01 ZN ? N/A Q96SW2 38086859
    819619 8u15:A (2.95) BS02 8W7 ? N/A Q96SW2 38086859
    819620 8u15:C (2.95) BS01 8W7 ? N/A Q9UJQ4 38086859
    819621 8u15:C (2.95) BS02 ZN ? N/A Q9UJQ4 38086859
    819622 8u15:C (2.95) BS03 ZN ? N/A Q9UJQ4 38086859
    819623 8u15:D (2.95) BS01 ZN ? N/A Q96SW2 38086859
    819624 8u15:D (2.95) BS02 8W7 ? N/A Q96SW2 38086859
    819625 8u15:F (2.95) BS01 8W7 ? N/A Q9UJQ4 38086859
    819626 8u15:F (2.95) BS02 ZN ? N/A Q9UJQ4 38086859
    819627 8u15:F (2.95) BS03 ZN ? N/A Q9UJQ4 38086859
    819628 8u16:A (2.9) BS01 ZN ? N/A Q96SW2 38086859
    819629 8u16:A (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    819630 8u16:C (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    819631 8u16:C (2.9) BS02 ZN ? N/A Q9UJQ4 38086859
    819632 8u16:C (2.9) BS03 ZN ? N/A Q9UJQ4 38086859
    819633 8u16:D (2.9) BS01 ZN ? N/A Q96SW2 38086859
    819634 8u16:D (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    819635 8u16:F (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    819636 8u16:F (2.9) BS02 ZN ? N/A Q9UJQ4 38086859
    819637 8u16:F (2.9) BS03 ZN ? N/A Q9UJQ4 38086859
    819638 8u17:A (3.1) BS01 ZN ? N/A Q96SW2 38086859
    819639 8u17:A (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    819640 8u17:C (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    819641 8u17:C (3.1) BS02 ZN ? N/A Q9UJQ4 38086859
    819642 8u17:C (3.1) BS03 ZN ? N/A Q9UJQ4 38086859
    819643 8u17:D (3.1) BS01 ZN ? N/A Q96SW2 38086859
    819644 8u17:D (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    819645 8u17:F (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    819646 8u17:F (3.1) BS02 ZN ? N/A Q9UJQ4 38086859
    819647 8u17:F (3.1) BS03 ZN ? N/A Q9UJQ4 38086859
    819648 8u1f:A (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    819649 8u1f:B (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    819650 8u1l:A (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819651 8u1l:A (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    819652 8u1l:B (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819653 8u1l:B (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    819654 8u1m:A (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819655 8u1m:A (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    819656 8u1m:B (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819657 8u1m:B (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    819658 8u1n:A (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819659 8u1n:B (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    819660 8u1w:A (1.84) BS01 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    819661 8u1w:A (1.84) BS02 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    819662 8u1x:C (2.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    819663 8u1x:C (2.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    819664 8u26:R (2.5) BS01 peptide ? GO:0002118 ... P25103 37973972
    819665 8u27:A (-1.00) BS01 ULL ? GO:0042981 ... P10415
    Q07817    		 37875561
    819666 8u2d:A (1.95) BS01 UQX 2.7.10.2 GO:0004672 ... Q06187 38300987
    819667 8u2e:A (1.9) BS01 UP9 2.7.10.2 GO:0004672 ... Q06187 38300987
    819668 8u2m:A (1.79) BS01 peptide 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819669 8u2m:A (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819670 8u2m:A (1.79) BS03 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819671 8u2m:B (1.79) BS01 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819672 8u2m:B (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819673 8u2m:B (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819674 8u2m:B (1.79) BS04 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819675 8u2m:C (1.79) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819676 8u2m:C (1.79) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819677 8u2m:C (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819678 8u2o:A (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    819679 8u2o:B (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    819680 8u2p:A (2.25) BS01 G5A 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    819681 8u2q:A (2.45) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    819682 8u2q:B (2.45) BS01 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    819683 8u2q:B (2.45) BS02 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    819684 8u2r:A (1.55) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    819685 8u2s:A (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    819686 8u2s:B (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    819687 8u2t:A (1.65) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    819688 8u2t:A (1.65) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    819689 8u2u:A (1.97) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    819690 8u2u:A (1.97) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    819691 8u2z:A (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    819692 8u2z:A (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    819693 8u2z:A (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    819694 8u2z:A (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    819695 8u2z:B (3.6) BS01 CLR ? GO:0005216 ... O35433 38698206
    819696 8u2z:B (3.6) BS02 PIO ? GO:0005216 ... O35433 38698206
    819697 8u2z:B (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    819698 8u2z:B (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    819699 8u2z:C (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    819700 8u2z:C (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    819701 8u2z:C (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    819702 8u2z:C (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    819703 8u2z:D (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    819704 8u2z:D (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    819705 8u2z:D (3.6) BS03 PIO ? GO:0005216 ... O35433 38698206
    819706 8u2z:D (3.6) BS04 CLR ? GO:0005216 ... O35433 38698206
    819707 8u30:A (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    819708 8u30:B (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    819709 8u30:C (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    819710 8u30:D (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    819711 8u36:A (2.6) BS01 peptide ? GO:0005737 ... P52293 N/A
    819712 8u36:A (2.6) BS02 peptide ? GO:0005737 ... P52293 N/A
    819713 8u37:A (2.48) BS01 V5U 2.7.11.13 GO:0004672 ... P17252 38198520
    819714 8u3a:A (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    819715 8u3a:D (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    819716 8u3b:A (3.23) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38197271
    819717 8u3b:C (3.23) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    819718 8u3b:C (3.23) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    819719 8u3b:C (3.23) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    819720 8u3b:D (3.23) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    819721 8u3b:D (3.23) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    819722 8u3b:D (3.23) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    819723 8u3b:D (3.23) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    819724 8u3b:D (3.23) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    819725 8u3b:F (3.23) BS01 dna ? GO:0000345 ... P00579 38197271
    819726 8u3b:F (3.23) BS02 dna ? GO:0000345 ... P00579 38197271
    819727 8u3b:G (3.23) BS01 dna ? GO:0003677 ... P0AF28 38197271
    819728 8u3b:G (3.23) BS02 dna ? GO:0003677 ... P0AF28 38197271
    819729 8u3b:H (3.23) BS01 dna ? GO:0003677 ... P0AF28 38197271
    819730 8u3b:H (3.23) BS02 dna ? GO:0003677 ... P0AF28 38197271
    819731 8u3c:A (2.3) BS01 VPN ? GO:0000122 ... O35433 38698206
    819732 8u3c:A (2.3) BS02 3PH ? GO:0000122 ... O35433 38698206
    819733 8u3c:D (2.3) BS01 3PH ? GO:0000122 ... O35433 38698206
    819734 8u3g:A (3.42) BS01 ASP ? GO:0005351 ... Q9NRA2 N/A
    819735 8u3g:A (3.42) BS02 GLU ? GO:0005351 ... Q9NRA2 N/A
    819736 8u3h:A (3.67) BS01 VP1 ? GO:0005351 ... Q9NRA2 N/A
    819737 8u3h:A (3.67) BS02 LEU ? GO:0005351 ... Q9NRA2 N/A
    819738 8u3n:A (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819739 8u3n:A (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819740 8u3n:B (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819741 8u3n:B (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819742 8u3n:C (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819743 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    819744 8u3y:A (3.1) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819745 8u3y:A (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819746 8u3y:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819747 8u3y:A (3.1) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819748 8u3y:A (3.1) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819749 8u3y:A (3.1) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819750 8u3y:A (3.1) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819751 8u3z:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    819752 8u3z:A (3.6) BS02 MG 3.6.5.- GO:0000226 ... P68363 38658656
    819753 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    819754 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    819755 8u3z:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    819756 8u3z:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    819757 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    819758 8u43:A (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    819759 8u43:B (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    819760 8u43:C (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    819761 8u43:D (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    819762 8u45:C (2.1) BS01 CA 3.4.21.63 GO:0004252 ... P28296 37864071
    819763 8u48:A (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    819764 8u48:A (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    819765 8u48:A (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    819766 8u48:A (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    819767 8u48:A (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    819768 8u48:A (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    819769 8u48:B (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    819770 8u48:B (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    819771 8u48:B (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    819772 8u48:B (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    819773 8u48:B (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    819774 8u48:B (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    819775 8u49:A (1.8) BS01 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819776 8u49:A (1.8) BS02 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819777 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819778 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819779 8u4a:A (1.97) BS03 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819780 8u4a:A (1.97) BS04 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819781 8u4d:A (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    819782 8u4d:A (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    819783 8u4d:B (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    819784 8u4d:B (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    819785 8u4d:C (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    819786 8u4d:C (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    819787 8u4d:D (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    819788 8u4d:D (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    819789 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819790 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819791 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819792 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819793 8u4f:A (2.01) BS05 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819794 8u4f:A (2.01) BS06 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    819795 8u4j:B (3.7) BS01 MAN 2.7.10.1 N/A Q15303 38498590
    819796 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    819797 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    819798 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    819799 8u4p:R (3.15) BS02 VH6 ? GO:0001618 ... P42212
    P61073    		 N/A
    819800 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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