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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818201 8th6:D (2.34) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    818202 8th7:A (2.88) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    818203 8th7:B (2.88) BS01 peptide 3.6.4.12
    3.6.4.13    		 N/A Q13283 38492217
    818204 8th9:A (2.08) BS01 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    818205 8th9:A (2.08) BS02 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    818206 8th9:A (2.08) BS03 ZN 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    818207 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    818208 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    818209 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    818210 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    818211 8thb:C (3.2) BS02 MG ? GO:0000077 ... P38629 38427736
    818212 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    818213 8thb:D (3.2) BS02 MG ? GO:0000076 ... P40348 38427736
    818214 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    818215 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    818216 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    818217 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    818218 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    818219 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    818220 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    818221 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    818222 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    818223 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    818224 8thd:B (3.25) BS03 MG ? GO:0000077 ... P40339 38427736
    818225 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    818226 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    818227 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    818228 8the:A (2.5) BS01 HEM ? GO:0009279 ... Q9HV88 38325368
    818229 8the:A (2.5) BS02 CTQ ? GO:0009279 ... Q9HV88 38325368
    818230 8thg:A (2.9) BS01 657 ? GO:0001518 ... Q15858 37782796
    818231 8thg:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37782796
    818232 8thg:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    818233 8thg:A (2.9) BS04 LPE ? GO:0001518 ... Q15858 37782796
    818234 8thg:A (2.9) BS05 LPE ? GO:0001518 ... Q15858 37782796
    818235 8thg:A (2.9) BS06 P5S ? GO:0001518 ... Q15858 37782796
    818236 8thg:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37782796
    818237 8thg:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37782796
    818238 8thh:A (2.7) BS01 IYJ ? GO:0001518 ... Q15858 37782796
    818239 8thh:A (2.7) BS02 IYJ ? GO:0001518 ... Q15858 37782796
    818240 8thh:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    818241 8thh:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37782796
    818242 8thh:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37782796
    818243 8thh:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37782796
    818244 8thh:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37782796
    818245 8thh:A (2.7) BS08 P5S ? GO:0001518 ... Q15858 37782796
    818246 8thh:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37782796
    818247 8thh:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37782796
    818248 8thh:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37782796
    818249 8thh:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37782796
    818250 8thh:A (2.7) BS13 Y01 ? GO:0001518 ... Q15858 37782796
    818251 8thk:R (2.6) BS01 CGZ 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    818252 8thl:R (3.1) BS01 ALE 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    818253 8thm:A (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    818254 8thm:A (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    818255 8thm:B (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    818256 8thm:B (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    818257 8thm:C (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    818258 8thm:C (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    818259 8thm:D (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    818260 8thm:D (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    818261 8thm:D (2.3) BS03 BCT 4.2.1.1 N/A B5ILN4 38728392
    818262 8thm:E (2.3) BS01 ZN 4.2.1.1 N/A B5ILN4 38728392
    818263 8thm:E (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    818264 8thm:F (2.3) BS01 BCT 4.2.1.1 N/A B5ILN4 38728392
    818265 8thm:F (2.3) BS02 ZN 4.2.1.1 N/A B5ILN4 38728392
    818266 8thm:F (2.3) BS03 RUB 4.2.1.1 N/A B5ILN4 38728392
    818267 8thn:C (2.9) BS01 TBA ? GO:0005249 ... P0A334 38042487
    818268 8thp:A (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    818269 8thp:A (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    818270 8thp:B (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    818271 8thp:B (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    818272 8thr:A (3.12) BS01 EBZ ? GO:0001975 ... Q05940 38517752
    818273 8thu:A (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    818274 8thu:A (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    818275 8thu:B (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    818276 8thu:B (3.1) BS02 dna ? GO:0000786 ... P62799 N/A
    818277 8thu:C (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    818278 8thu:C (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    818279 8thu:D (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    818280 8thu:D (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    818281 8thu:E (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    818282 8thu:E (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    818283 8thu:F (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    818284 8thu:G (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    818285 8thu:G (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    818286 8thu:H (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    818287 8thu:H (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    818288 8ti0:A (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818289 8ti0:B (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818290 8ti0:C (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818291 8ti0:D (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818292 8ti0:E (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818293 8ti0:F (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818294 8ti0:G (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    818295 8ti1:A (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818296 8ti1:A (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818297 8ti1:B (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818298 8ti1:B (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818299 8ti1:C (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818300 8ti1:C (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818301 8ti1:D (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818302 8ti1:D (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818303 8ti1:E (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818304 8ti1:E (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818305 8ti1:E (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818306 8ti1:F (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818307 8ti1:F (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818308 8ti1:F (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818309 8ti1:G (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818310 8ti1:G (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818311 8ti1:G (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818312 8ti1:H (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818313 8ti1:H (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818314 8ti1:H (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818315 8ti2:A (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818316 8ti2:A (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818317 8ti2:B (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818318 8ti2:B (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818319 8ti2:C (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818320 8ti2:C (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818321 8ti2:D (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    818322 8ti2:D (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    818323 8ti2:E (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818324 8ti2:E (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818325 8ti2:E (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818326 8ti2:F (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818327 8ti2:F (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818328 8ti2:F (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818329 8ti2:G (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818330 8ti2:G (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818331 8ti2:G (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818332 8ti2:H (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    818333 8ti2:H (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818334 8ti2:H (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    818335 8ti7:A (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818336 8ti7:A (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818337 8ti7:C (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818338 8ti7:C (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818339 8ti7:E (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818340 8ti7:E (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818341 8ti7:G (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818342 8ti7:I (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818343 8ti7:K (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818344 8ti7:K (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818345 8ti7:K (2.397) BS03 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818346 8ti7:M (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818347 8ti7:O (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818348 8ti7:O (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    818349 8tic:A (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818350 8tic:B (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818351 8tic:C (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818352 8tic:D (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818353 8tip:C (2.79) BS01 dna ? GO:0003677 ... P03856 N/A
    818354 8tip:C (2.79) BS02 dna ? GO:0003677 ... P03856 N/A
    818355 8tip:C (2.79) BS03 MG ? GO:0003677 ... P03856 N/A
    818356 8tip:C (2.79) BS04 MG ? GO:0003677 ... P03856 N/A
    818357 8tiq:C (2.45) BS01 dna ? GO:0003677 ... P03856 N/A
    818358 8tiq:C (2.45) BS02 dna ? GO:0003677 ... P03856 N/A
    818359 8tiq:C (2.45) BS03 MG ? GO:0003677 ... P03856 N/A
    818360 8tir:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    818361 8tir:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    818362 8tir:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    818363 8tis:C (2.54) BS01 dna ? GO:0003677 ... P03856 N/A
    818364 8tis:C (2.54) BS02 dna ? GO:0003677 ... P03856 N/A
    818365 8tis:C (2.54) BS03 MG ? GO:0003677 ... P03856 N/A
    818366 8tit:C (2.84) BS01 dna ? GO:0003677 ... P03856 N/A
    818367 8tit:C (2.84) BS02 dna ? GO:0003677 ... P03856 N/A
    818368 8tit:C (2.84) BS03 MG ? GO:0003677 ... P03856 N/A
    818369 8tiu:C (3.9) BS01 dna ? GO:0003677 ... P03856 N/A
    818370 8tiu:C (3.9) BS02 dna ? GO:0003677 ... P03856 N/A
    818371 8tiu:C (3.9) BS03 MG ? GO:0003677 ... P03856 N/A
    818372 8tiv:C (3.35) BS01 dna ? GO:0003677 ... P03856 N/A
    818373 8tiv:C (3.35) BS02 dna ? GO:0003677 ... P03856 N/A
    818374 8tiv:C (3.35) BS03 MG ? GO:0003677 ... P03856 N/A
    818375 8tiw:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    818376 8tiw:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    818377 8tiw:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    818378 8tix:C (2.91) BS01 dna ? GO:0003677 ... P03856 N/A
    818379 8tix:C (2.91) BS02 dna ? GO:0003677 ... P03856 N/A
    818380 8tix:C (2.91) BS03 MG ? GO:0003677 ... P03856 N/A
    818381 8tiy:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    818382 8tiy:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    818383 8tiy:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    818384 8tiz:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    818385 8tiz:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    818386 8tiz:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    818387 8tj0:C (3.24) BS01 dna ? GO:0003677 ... P03856 N/A
    818388 8tj0:C (3.24) BS02 dna ? GO:0003677 ... P03856 N/A
    818389 8tj0:C (3.24) BS03 MG ? GO:0003677 ... P03856 N/A
    818390 8tj1:C (3.15) BS01 dna ? GO:0003677 ... P03856 N/A
    818391 8tj1:C (3.15) BS02 dna ? GO:0003677 ... P03856 N/A
    818392 8tj1:C (3.15) BS03 MG ? GO:0003677 ... P03856 N/A
    818393 8tj4:A (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    818394 8tj4:C (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    818395 8tj4:E (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    818396 8tj4:G (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    818397 8tj5:0 (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    818398 8tj5:E (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    818399 8tj5:E (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    818400 8tj5:E (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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