Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4074 4075 4076 4077 4078 4079 4080 4081 4082 4083 4084 4085 4086 4087 4088 4089 4090 4091 4092 4093 4094 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816601 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    816602 8t3t:A (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    816603 8t3t:C (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    816604 8t3t:D (3.21) BS01 dna ? GO:0000786 ... P02281 37872231
    816605 8t3t:E (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    816606 8t3t:E (3.21) BS02 dna ? GO:0000786 ... P84233 37872231
    816607 8t3t:F (3.21) BS01 dna ? GO:0000786 ... P62799 37872231
    816608 8t3t:G (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    816609 8t3t:G (3.21) BS02 dna ? GO:0000786 ... P06897 37872231
    816610 8t3t:K (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816611 8t3t:K (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816612 8t3t:L (3.21) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816613 8t3t:L (3.21) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816614 8t3u:A (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    816615 8t3u:A (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    816616 8t3u:B (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    816617 8t3u:B (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    816618 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    816619 8t3w:A (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    816620 8t3w:A (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    816621 8t3w:B (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    816622 8t3w:B (3.25) BS02 dna ? GO:0000786 ... P62799 37872231
    816623 8t3w:C (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    816624 8t3w:C (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    816625 8t3w:D (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    816626 8t3w:E (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    816627 8t3w:E (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    816628 8t3w:F (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    816629 8t3w:G (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    816630 8t3w:G (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    816631 8t3w:H (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    816632 8t3w:K (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816633 8t3w:K (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816634 8t3w:L (3.25) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816635 8t3w:L (3.25) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816636 8t3y:A (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    816637 8t3y:A (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    816638 8t3y:B (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    816639 8t3y:B (3.47) BS02 dna ? GO:0000786 ... P62799 37872231
    816640 8t3y:C (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    816641 8t3y:C (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    816642 8t3y:D (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    816643 8t3y:E (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    816644 8t3y:E (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    816645 8t3y:F (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    816646 8t3y:G (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    816647 8t3y:G (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    816648 8t3y:H (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    816649 8t3y:K (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816650 8t3y:K (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816651 8t3y:L (3.47) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816652 8t3y:L (3.47) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37872231
    816653 8t41:A (1.45) BS01 ZN 3.4.11.2 GO:0004177 ... L7N655 N/A
    816654 8t41:A (1.45) BS02 MG 3.4.11.2 GO:0004177 ... L7N655 N/A
    816655 8t42:A (3.6) BS01 peptide 3.6.5.- GO:0000226 ... P68363 38658656
    816656 8t42:A (3.6) BS02 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    816657 8t42:A (3.6) BS03 MG 3.6.5.- GO:0000226 ... P68363 38658656
    816658 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    816659 8t42:B (3.6) BS01 peptide ? GO:0000226 ... P07437 38658656
    816660 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    816661 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    816662 8t42:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    816663 8t42:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    816664 8t44:A (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    816665 8t44:A (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    816666 8t44:B (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    816667 8t44:B (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    816668 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    816669 8t45:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    816670 8t45:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    816671 8t45:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    816672 8t47:A (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    816673 8t47:A (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    816674 8t47:B (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    816675 8t47:B (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    816676 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    816677 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    816678 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    816679 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    816680 8t4o:A (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    816681 8t4o:A (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816682 8t4o:A (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816683 8t4o:B (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    816684 8t4o:B (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816685 8t4o:B (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816686 8t4p:A (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816687 8t4p:A (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    816688 8t4p:A (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816689 8t4p:B (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816690 8t4p:B (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    816691 8t4p:B (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    816692 8t4r:A (1.2) BS01 peptide ? GO:0003677 ... P55895 38266163
    816693 8t4r:A (1.2) BS02 ZN ? GO:0003677 ... P55895 38266163
    816694 8t4r:A (1.2) BS03 ZN ? GO:0003677 ... P55895 38266163
    816695 8t4s:A (2.6) BS01 rna ? GO:0000028 ... P08865 37733586
    816696 8t4s:B (2.6) BS01 rna ? GO:0002181 ... P61247 37733586
    816697 8t4s:C (2.6) BS01 rna ? GO:0002181 ... P15880 37733586
    816698 8t4s:C (2.6) BS02 peptide ? GO:0002181 ... P15880 37733586
    816699 8t4s:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37733586
    816700 8t4s:D (2.6) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 37733586
    816701 8t4s:E (2.6) BS01 rna ? GO:0002181 ... P62701 37733586
    816702 8t4s:F (2.6) BS01 rna ? GO:0000028 ... P46782 37733586
    816703 8t4s:G (2.6) BS01 rna ? GO:0000082 ... P62753 37733586
    816704 8t4s:H (2.6) BS01 rna ? GO:0001843 ... P62081 37733586
    816705 8t4s:I (2.6) BS01 rna ? GO:0000462 ... P62241 37733586
    816706 8t4s:J (2.6) BS01 rna ? GO:0002181 ... P46781 37733586
    816707 8t4s:K (2.6) BS01 rna ? GO:0002181 ... P46783 37733586
    816708 8t4s:L (2.6) BS01 rna ? GO:0002181 ... P62280 37733586
    816709 8t4s:M (2.6) BS01 rna ? GO:0002181 ... P25398 37733586
    816710 8t4s:N (2.6) BS01 rna ? GO:0002181 ... P62277 37733586
    816711 8t4s:O (2.6) BS01 rna ? GO:0000028 ... P62263 37733586
    816712 8t4s:P (2.6) BS01 rna ? GO:0000028 ... P62841 37733586
    816713 8t4s:Q (2.6) BS01 rna ? GO:0000462 ... P62249 37733586
    816714 8t4s:R (2.6) BS01 rna ? GO:0002181 ... P08708 37733586
    816715 8t4s:S (2.6) BS01 rna ? GO:0002181 ... P62269 37733586
    816716 8t4s:T (2.6) BS01 rna ? GO:0000028 ... P39019 37733586
    816717 8t4s:U (2.6) BS01 rna ? GO:0002181 ... P60866 37733586
    816718 8t4s:W (2.6) BS01 rna ? GO:0002181 ... P62244 37733586
    816719 8t4s:X (2.6) BS01 rna ? GO:0002181 ... P62266 37733586
    816720 8t4s:Y (2.6) BS01 rna ? GO:0002181 ... P62847 37733586
    816721 8t4s:Z (2.6) BS01 rna ? GO:0002181 ... P62851 37733586
    816722 8t4s:a (2.6) BS01 rna ? GO:0002181 ... P62854 37733586
    816723 8t4s:a (2.6) BS02 ZN ? GO:0002181 ... P62854 37733586
    816724 8t4s:b (2.6) BS01 rna ? GO:0000028 ... P42677 37733586
    816725 8t4s:c (2.6) BS01 rna ? GO:0000028 ... P62857 37733586
    816726 8t4s:d (2.6) BS01 rna ? GO:0002181 ... P62273 37733586
    816727 8t4s:d (2.6) BS02 ZN ? GO:0002181 ... P62273 37733586
    816728 8t4s:e (2.6) BS01 rna ? GO:0002181 ... P62861 37733586
    816729 8t4s:f (2.6) BS01 rna ? GO:0002181 ... P62979 37733586
    816730 8t4s:f (2.6) BS02 ZN ? GO:0002181 ... P62979 37733586
    816731 8t4s:g (2.6) BS01 rna ? GO:0001891 ... P63244 37733586
    816732 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    816733 8t4v:A (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    816734 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    816735 8t4v:B (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    816736 8t55:A (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    816737 8t55:B (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    816738 8t55:C (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    816739 8t56:A (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    816740 8t56:A (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    816741 8t56:A (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    816742 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    816743 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    816744 8t56:B (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    816745 8t56:B (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    816746 8t56:B (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    816747 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    816748 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    816749 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    816750 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    816751 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    816752 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    816753 8t5g:A (1.92) BS01 THA ? GO:0005085 ... Q07890 38156904
    816754 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    816755 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    816756 8t5j:A (1.55) BS01 MG ? N/A B0TX44 N/A
    816757 8t5k:B (1.95) BS01 YGI ? GO:0002218 ... Q86WV6 37425806
    816758 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    816759 8t5m:A (1.79) BS01 YIF ? GO:0005085 ... Q07890 38156904
    816760 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    816761 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    816762 8t5p:A (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    816763 8t5p:B (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    816764 8t5p:D (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    816765 8t5q:A (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    816766 8t5q:B (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    816767 8t5q:D (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    816768 8t5r:A (2.12) BS01 6LH ? GO:0005085 ... Q07890 38156904
    816769 8t5s:A (2.9) BS01 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    816770 8t5s:A (2.9) BS02 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    816771 8t5s:A (2.9) BS03 ZN 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    816772 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    816773 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816774 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816775 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816776 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816777 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816778 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816779 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816780 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816781 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816782 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816783 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816784 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816785 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    816786 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    816787 8t5w:A (1.65) BS01 MN 3.1.-.- N/A C3W5S0 38190441
    816788 8t5w:A (1.65) BS02 MN 3.1.-.- N/A C3W5S0 38190441
    816789 8t5w:A (1.65) BS03 E4Z 3.1.-.- N/A C3W5S0 38190441
    816790 8t5w:A (1.65) BS04 E4Z 3.1.-.- N/A C3W5S0 38190441
    816791 8t5z:A (2.03) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816792 8t5z:A (2.03) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816793 8t65:A (2.09) BS01 rna ? N/A D5BXZ3 38200316
    816794 8t65:B (2.09) BS01 rna ? N/A D5BXZ3 38200316
    816795 8t66:A (1.85) BS01 rna ? N/A D5BXZ3 38200316
    816796 8t66:B (1.85) BS01 rna ? N/A D5BXZ3 38200316
    816797 8t67:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816798 8t67:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816799 8t69:A (2.89) BS01 YHL ? GO:0001975 ... Q05940 37914936
    816800 8t6a:A (3.17) BS01 YHR ? GO:0001975 ... Q05940 37914936
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218