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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816201 8syl:g (2.9) BS01 rna ? GO:0003723 ... P02359 37537169
    816202 8syl:g (2.9) BS02 rna ? GO:0003723 ... P02359 37537169
    816203 8syl:h (2.9) BS01 rna ? GO:0000028 ... P0A7W7 37537169
    816204 8syl:i (2.9) BS01 rna ? GO:0000049 ... P0A7X3 37537169
    816205 8syl:i (2.9) BS02 rna ? GO:0000049 ... P0A7X3 37537169
    816206 8syl:j (2.9) BS01 rna ? GO:0000049 ... P0A7R5 37537169
    816207 8syl:k (2.9) BS01 rna ? GO:0002181 ... P0A7R9 37537169
    816208 8syl:l (2.9) BS01 rna ? GO:0000049 ... P0A7S3 37537169
    816209 8syl:l (2.9) BS02 rna ? GO:0000049 ... P0A7S3 37537169
    816210 8syl:m (2.9) BS01 rna ? GO:0000049 ... P0A7S9 37537169
    816211 8syl:m (2.9) BS02 rna ? GO:0000049 ... P0A7S9 37537169
    816212 8syl:n (2.9) BS01 rna ? GO:0000028 ... P0AG59 37537169
    816213 8syl:o (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 37537169
    816214 8syl:o (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 37537169
    816215 8syl:p (2.9) BS01 rna ? GO:0000028 ... P0A7T3 37537169
    816216 8syl:q (2.9) BS01 rna ? GO:0000028 ... P0AG63 37537169
    816217 8syl:r (2.9) BS01 rna ? GO:0002181 ... P0A7T7 37537169
    816218 8syl:s (2.9) BS01 rna ? GO:0000028 ... P0A7U3 37537169
    816219 8syl:t (2.9) BS01 rna ? GO:0000028 ... P0A7U7 37537169
    816220 8syl:u (2.9) BS01 rna ? GO:0000028 ... P68679 37537169
    816221 8syp:A (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    816222 8syp:A (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    816223 8syp:B (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    816224 8syp:B (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    816225 8syp:C (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    816226 8syp:C (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    816227 8syp:D (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    816228 8syp:D (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    816229 8syp:E (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    816230 8syp:E (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    816231 8syp:F (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    816232 8syp:F (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    816233 8syp:G (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    816234 8syp:G (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    816235 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    816236 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    816237 8sz2:A (2.01) BS01 peptide 3.2.2.22 N/A P09385 N/A
    816238 8sz2:B (2.01) BS01 peptide 3.2.2.22 N/A P09385 N/A
    816239 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    816240 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    816241 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    816242 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    816243 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    816244 8sz6:B (1.65) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    816245 8sz6:B (1.65) BS04 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    816246 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816247 8sz8:b (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816248 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816249 8sz8:c (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816250 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816251 8sz8:f (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816252 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816253 8sz8:g (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816254 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816255 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816256 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816257 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816258 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816259 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    816260 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    816261 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    816262 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    816263 8szd:A (1.25) BS01 MG 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    816264 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    816265 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    816266 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    816267 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    816268 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    816269 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    816270 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    816271 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    816272 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    816273 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    816274 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    816275 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    816276 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    816277 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    816278 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    816279 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    816280 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    816281 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    816282 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    816283 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    816284 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    816285 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    816286 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    816287 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    816288 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    816289 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    816290 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816291 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816292 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816293 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816294 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816295 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816296 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816297 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816298 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816299 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816300 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816301 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    816302 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    816303 8szp:A (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    816304 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    816305 8szp:B (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    816306 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    816307 8szq:A (2.711) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    816308 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    816309 8szr:A (2.97) BS02 MG 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    816310 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    816311 8szs:A (2.38) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    816312 8szt:A (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    816313 8szt:B (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    816314 8szt:C (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    816315 8szt:D (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    816316 8szu:A (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    816317 8szu:A (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    816318 8szu:A (1.75) BS03 ZN ? GO:0000122 ... R8YPJ7 37624144
    816319 8szu:A (1.75) BS04 X4U ? GO:0000122 ... R8YPJ7 37624144
    816320 8szu:B (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    816321 8szu:B (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    816322 8szu:B (1.75) BS03 X4U ? GO:0000122 ... R8YPJ7 37624144
    816323 8szu:B (1.75) BS04 ZN ? GO:0000122 ... R8YPJ7 37624144
    816324 8szv:A (2.2) BS01 X1D ? GO:0003677 ... O75469 37729916
    816325 8t03:A (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816326 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    816327 8t03:A (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    816328 8t03:B (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816329 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    816330 8t03:B (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    816331 8t04:A (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816332 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    816333 8t04:A (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    816334 8t04:B (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816335 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    816336 8t04:B (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    816337 8t06:A (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816338 8t06:B (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816339 8t07:A (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816340 8t07:B (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    816341 8t09:A (2.15) BS01 XHZ ? GO:0005856 ... O00522 37974623
    816342 8t09:B (2.15) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    816343 8t09:B (2.15) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    816344 8t0c:A (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816345 8t0c:B (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816346 8t0c:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816347 8t0c:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816348 8t0e:A (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816349 8t0e:B (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816350 8t0e:C (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816351 8t0e:D (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816352 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816353 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816354 8t0k:c (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    816355 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816356 8t0k:f (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    816357 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816358 8t0n:A (1.86) BS01 Y0B 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    816359 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    816360 8t0p:A (1.73) BS01 peptide ? N/A P53298 37983946
    816361 8t0p:B (1.73) BS01 peptide ? N/A P38313 37983946
    816362 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816363 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816364 8t0r:c (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    816365 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816366 8t0r:f (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    816367 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    816368 8t0s:A (1.95) BS01 peptide 2.3.2.23 GO:0004842 ... P60604 N/A
    816369 8t0t:A (1.75) BS01 Y6E 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    816370 8t0y:A (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816371 8t0y:B (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816372 8t0y:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816373 8t0y:C (3.5) BS02 8IJ ? GO:0000122 ... O35433 38698206
    816374 8t0y:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    816375 8t0z:A (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816376 8t0z:B (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816377 8t0z:C (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816378 8t0z:D (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816379 8t0z:E (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816380 8t0z:F (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816381 8t0z:G (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816382 8t0z:H (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816383 8t0z:I (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816384 8t0z:J (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816385 8t0z:K (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816386 8t0z:L (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    816387 8t10:A (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    816388 8t10:B (3.7) BS01 8IJ ? GO:0000122 ... O35433 38698206
    816389 8t10:B (3.7) BS02 NKN ? GO:0000122 ... O35433 38698206
    816390 8t10:C (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    816391 8t10:D (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    816392 8t10:D (3.7) BS02 8IJ ? GO:0000122 ... O35433 38698206
    816393 8t12:B (3.34) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    816394 8t12:B (3.34) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    816395 8t13:B (3.45) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    816396 8t13:B (3.45) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    816397 8t14:A (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816398 8t14:B (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816399 8t14:C (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816400 8t14:D (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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