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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816001 8swj:B (1.6) BS02 WWQ ? N/A Q12888 N/A
    816002 8swj:C (1.6) BS01 WWQ ? N/A Q12888 N/A
    816003 8swj:C (1.6) BS02 WWQ ? N/A Q12888 N/A
    816004 8swj:D (1.6) BS01 WWQ ? N/A Q12888 N/A
    816005 8swj:D (1.6) BS02 WWQ ? N/A Q12888 N/A
    816006 8swk:A (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816007 8swk:A (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816008 8swk:B (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816009 8swk:B (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816010 8swk:C (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816011 8swk:C (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816012 8swk:D (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816013 8swk:D (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816014 8swk:E (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816015 8swk:E (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816016 8swk:F (4.32) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816017 8swk:F (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816018 8swl:A (3.06) BS01 HEM ? GO:0004497 ... B2HG54 38430969
    816019 8swm:A (3.0) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    816020 8swm:A (3.0) BS02 X2X 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    816021 8swn:A (3.1) BS01 MG ? GO:0005524 ... F1MUC1 38216659
    816022 8swn:A (3.1) BS02 MG ? GO:0005524 ... F1MUC1 38216659
    816023 8swn:A (3.1) BS03 ATP ? GO:0005524 ... F1MUC1 38216659
    816024 8swn:A (3.1) BS04 ATP ? GO:0005524 ... F1MUC1 38216659
    816025 8swp:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816026 8swp:B (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816027 8swp:D (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816028 8swp:E (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816029 8swq:A (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816030 8swq:B (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816031 8swq:D (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816032 8swq:E (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816033 8swr:A (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816034 8swr:B (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816035 8swr:D (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816036 8sws:A (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816037 8sws:B (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816038 8sws:D (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816039 8sws:E (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    816040 8swt:A (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    816041 8swt:B (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    816042 8swu:A (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    816043 8swu:B (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    816044 8swu:C (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    816045 8swy:A (2.55) BS01 NAI 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816046 8swy:B (2.55) BS01 NAI 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816047 8swz:A (3.0) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816048 8swz:B (3.0) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816049 8sx0:B (1.65) BS01 CA ? N/A P12255 N/A
    816050 8sx2:A (2.95) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816051 8sx2:B (2.95) BS01 UHB 2.4.2.- GO:0003950 ... Q9UKK3 37971310
    816052 8sx4:A (1.986) BS01 WXL ? GO:0003723 ... P06730 37471629
    816053 8sx4:B (1.986) BS01 M7G ? GO:0003723 ... P06730 37471629
    816054 8sx7:A (2.7) BS01 ZWY ? GO:0005524 ... F1MUC1 38216659
    816055 8sx8:A (3.5) BS01 XPG ? GO:0005524 ... F1MUC1 38216659
    816056 8sxb:A (2.9) BS01 P2E ? GO:0005524 ... A0A6P5CNW8 38216659
    816057 8sxd:A (2.59) BS01 WXU 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    816058 8sxd:A (2.59) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    816059 8sxd:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    816060 8sxe:A (3.55) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816061 8sxe:B (3.55) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816062 8sxf:A (3.92) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816063 8sxg:A (4.14) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816064 8sxh:A (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816065 8sxh:E (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816066 8sxh:I (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    816067 8sxn:C (4.04) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816068 8sxn:C (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816069 8sxn:D (4.04) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    816070 8sxn:D (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    816071 8sxr:A (2.114) BS01 WZK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37555275
    816072 8sxr:B (2.114) BS01 WZK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37555275
    816073 8sxt:A (3.3) BS01 dna 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096902
    816074 8sxt:A (3.3) BS02 rna 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096902
    816075 8sxt:A (3.3) BS03 TTP 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096902
    816076 8sxt:A (3.3) BS04 MG 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096902
    816077 8sxu:A (3.66) BS01 rna 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096902
    816078 8sxy:A (1.8) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816079 8sxy:B (1.8) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816080 8sxz:b (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816081 8sxz:b (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816082 8sxz:c (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816083 8sxz:c (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816084 8sxz:f (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816085 8sxz:f (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816086 8sxz:g (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    816087 8sxz:g (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    816088 8sy0:A (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816089 8sy0:B (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816090 8sy3:A (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    816091 8sy3:B (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    816092 8sy5:I (2.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816093 8sy5:J (2.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816094 8sy5:J (2.7) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816095 8sy5:J (2.7) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816096 8sy5:J (2.7) BS04 X0F 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816097 8sy6:I (3.28) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816098 8sy6:I (3.28) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816099 8sy6:I (3.28) BS03 UTP 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816100 8sy6:J (3.28) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816101 8sy6:J (3.28) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816102 8sy6:J (3.28) BS03 DG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816103 8sy6:J (3.28) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816104 8sy6:J (3.28) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816105 8sy6:J (3.28) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816106 8sy6:J (3.28) BS07 UTP 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816107 8sy7:I (2.65) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816108 8sy7:I (2.65) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816109 8sy7:I (2.65) BS03 X0O 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    816110 8sy7:J (2.65) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816111 8sy7:J (2.65) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816112 8sy7:J (2.65) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816113 8sy7:J (2.65) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816114 8sy7:J (2.65) BS05 X0O 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    816115 8sy9:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816116 8sy9:A (2.2) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816117 8sy9:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816118 8sy9:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816119 8sya:A (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816120 8sya:B (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816121 8sya:B (2.3) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816122 8syb:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816123 8syb:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816124 8syb:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816125 8syb:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816126 8syc:A (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    816127 8syc:A (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    816128 8syc:D (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    816129 8syc:D (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    816130 8syd:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816131 8syd:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816132 8syd:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816133 8syd:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816134 8sye:A (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816135 8sye:A (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816136 8sye:B (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816137 8sye:B (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816138 8syh:A (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816139 8syh:A (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816140 8syh:B (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816141 8syh:B (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    816142 8syi:C (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    816143 8syi:C (2.94) BS02 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    816144 8syi:C (2.94) BS03 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    816145 8syi:D (2.94) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    816146 8syi:D (2.94) BS02 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    816147 8syi:D (2.94) BS03 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    816148 8syi:D (2.94) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    816149 8syi:D (2.94) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    816150 8syi:G (2.94) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    816151 8syi:Z (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    816152 8syi:Z (2.94) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    816153 8syl:1 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 37537169
    816154 8syl:2 (2.9) BS01 rna ? GO:0000027 ... P0AG51 37537169
    816155 8syl:2 (2.9) BS02 rna ? GO:0000027 ... P0AG51 37537169
    816156 8syl:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 37537169
    816157 8syl:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 37537169
    816158 8syl:4 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 37537169
    816159 8syl:5 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 37537169
    816160 8syl:6 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 37537169
    816161 8syl:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 37537169
    816162 8syl:8 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 37537169
    816163 8syl:8 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 37537169
    816164 8syl:C (2.9) BS01 rna ? GO:0000027 ... P60422 37537169
    816165 8syl:C (2.9) BS02 rna ? GO:0000027 ... P60422 37537169
    816166 8syl:C (2.9) BS03 MG ? GO:0000027 ... P60422 37537169
    816167 8syl:D (2.9) BS01 rna ? GO:0000027 ... P60438 37537169
    816168 8syl:E (2.9) BS01 rna ? GO:0001070 ... P60723 37537169
    816169 8syl:F (2.9) BS01 rna ? GO:0000027 ... P62399 37537169
    816170 8syl:F (2.9) BS02 rna ? GO:0000027 ... P62399 37537169
    816171 8syl:F (2.9) BS03 rna ? GO:0000027 ... P62399 37537169
    816172 8syl:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 37537169
    816173 8syl:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 37537169
    816174 8syl:L (2.9) BS01 rna ? GO:0002181 ... P0AA10 37537169
    816175 8syl:M (2.9) BS01 rna ? GO:0002181 ... P0ADY3 37537169
    816176 8syl:M (2.9) BS02 rna ? GO:0002181 ... P0ADY3 37537169
    816177 8syl:N (2.9) BS01 rna ? GO:0002181 ... P02413 37537169
    816178 8syl:O (2.9) BS01 rna ? GO:0000027 ... P0ADY7 37537169
    816179 8syl:O (2.9) BS02 rna ? GO:0000027 ... P0ADY7 37537169
    816180 8syl:O (2.9) BS03 rna ? GO:0000027 ... P0ADY7 37537169
    816181 8syl:P (2.9) BS01 rna ? GO:0000027 ... P0AG44 37537169
    816182 8syl:Q (2.9) BS01 rna ? GO:0002181 ... P0C018 37537169
    816183 8syl:Q (2.9) BS02 rna ? GO:0002181 ... P0C018 37537169
    816184 8syl:R (2.9) BS01 rna ? GO:0000027 ... P0A7K6 37537169
    816185 8syl:R (2.9) BS02 rna ? GO:0000027 ... P0A7K6 37537169
    816186 8syl:S (2.9) BS01 rna ? GO:0000027 ... P0A7L3 37537169
    816187 8syl:T (2.9) BS01 rna ? GO:0002181 ... P0AG48 37537169
    816188 8syl:U (2.9) BS01 rna ? GO:0002181 ... P61175 37537169
    816189 8syl:V (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 37537169
    816190 8syl:W (2.9) BS01 rna ? GO:0000027 ... P60624 37537169
    816191 8syl:X (2.9) BS01 rna ? GO:0000027 ... P68919 37537169
    816192 8syl:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 37537169
    816193 8syl:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 37537169
    816194 8syl:Y (2.9) BS03 rna ? GO:0000027 ... P0A7L8 37537169
    816195 8syl:Z (2.9) BS01 rna ? GO:0000027 ... P0A7M2 37537169
    816196 8syl:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 37537169
    816197 8syl:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 37537169
    816198 8syl:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 37537169
    816199 8syl:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 37537169
    816200 8syl:f (2.9) BS01 rna ? GO:0002181 ... P02358 37537169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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