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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813201 8shf:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813202 8shf:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813203 8shf:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813204 8shf:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813205 8shf:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813206 8shf:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813207 8shf:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813208 8shf:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813209 8shf:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813210 8shf:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813211 8shf:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813212 8shf:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813213 8shf:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813214 8shf:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813215 8shf:q (3.0) BS02 MG ? GO:0002199 ... P50990 37852256
    813216 8shf:q (3.0) BS03 AF3 ? GO:0002199 ... P50990 37852256
    813217 8shf:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813218 8shf:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813219 8shg:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813220 8shg:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813221 8shg:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813222 8shg:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813223 8shg:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813224 8shg:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813225 8shg:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813226 8shg:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813227 8shg:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813228 8shg:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813229 8shg:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813230 8shg:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813231 8shg:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813232 8shg:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813233 8shg:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813234 8shg:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    813235 8shg:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    813236 8shg:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813237 8shg:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813238 8shg:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813239 8shg:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813240 8shg:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813241 8shg:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813242 8shg:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813243 8shg:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813244 8shg:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813245 8shg:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813246 8shg:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813247 8shg:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813248 8shg:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813249 8shg:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813250 8shg:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813251 8shg:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813252 8shh:A (1.93) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    813253 8shh:B (1.93) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    813254 8shi:A (2.90002) BS01 peptide ? N/A F6IQM2 37330172
    813255 8shi:D (2.90002) BS01 peptide ? N/A F6IQM2 37330172
    813256 8shj:A (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    813257 8shj:B (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    813258 8shj:C (2.21) BS01 ZI8 ? GO:0045022 ... A4D1P6 37996079
    813259 8shk:C (1.71) BS01 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813260 8shk:C (1.71) BS02 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813261 8shl:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813262 8shl:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813263 8shl:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813264 8shl:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813265 8shl:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813266 8shl:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813267 8shl:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813268 8shl:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813269 8shl:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813270 8shl:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813271 8shl:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813272 8shl:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813273 8shl:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813274 8shl:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813275 8shl:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813276 8shl:Z (3.0) BS02 MG ? GO:0003723 ... P40227 37852256
    813277 8shl:Z (3.0) BS03 AF3 ? GO:0003723 ... P40227 37852256
    813278 8shl:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813279 8shl:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813280 8shl:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813281 8shl:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813282 8shl:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813283 8shl:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813284 8shl:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813285 8shl:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813286 8shl:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813287 8shl:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813288 8shl:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813289 8shl:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813290 8shl:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813291 8shl:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813292 8shl:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813293 8shl:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813294 8shn:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813295 8shn:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813296 8shn:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813297 8shn:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813298 8shn:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813299 8shn:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813300 8shn:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813301 8shn:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813302 8shn:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813303 8shn:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813304 8shn:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813305 8shn:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813306 8shn:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813307 8shn:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813308 8shn:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813309 8shn:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    813310 8shn:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    813311 8shn:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813312 8shn:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813313 8shn:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813314 8shn:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813315 8shn:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813316 8shn:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813317 8shn:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813318 8shn:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813319 8shn:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813320 8shn:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813321 8shn:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813322 8shn:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813323 8shn:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813324 8shn:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813325 8shn:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813326 8shn:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813327 8sho:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813328 8sho:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813329 8sho:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813330 8sho:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813331 8sho:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813332 8sho:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813333 8sho:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813334 8sho:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813335 8sho:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813336 8sho:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813337 8sho:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813338 8sho:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813339 8sho:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813340 8sho:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813341 8sho:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813342 8sho:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813343 8sho:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813344 8sho:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813345 8sho:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813346 8sho:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813347 8sho:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813348 8sho:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813349 8sho:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813350 8sho:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813351 8sho:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813352 8sho:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813353 8sho:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813354 8sho:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813355 8sho:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813356 8sho:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813357 8sho:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813358 8sho:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813359 8shp:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813360 8shp:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813361 8shp:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813362 8shp:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813363 8shp:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813364 8shp:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813365 8shp:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813366 8shp:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813367 8shp:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813368 8shp:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813369 8shp:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813370 8shp:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813371 8shp:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813372 8shp:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813373 8shp:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813374 8shp:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813375 8shp:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813376 8shp:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813377 8shp:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813378 8shp:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813379 8shp:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813380 8shp:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813381 8shp:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813382 8shp:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813383 8shp:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813384 8shp:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813385 8shp:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813386 8shp:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813387 8shp:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813388 8shp:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813389 8shp:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813390 8shp:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813391 8shq:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    813392 8shq:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813393 8shq:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    813394 8shq:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813395 8shq:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    813396 8shq:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813397 8shq:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    813398 8shq:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813399 8shq:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    813400 8shq:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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