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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812401 8sf7:KE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812402 8sf7:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812403 8sf7:KG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812404 8sf7:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812405 8sf7:KI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812406 8sf7:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812407 8sf7:KK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812408 8sf7:KL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812409 8sf7:KL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812410 8sf7:KM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812411 8sf7:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812412 8sf7:LA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812413 8sf7:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812414 8sf7:LC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812415 8sf7:LC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812416 8sf7:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812417 8sf7:LE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812418 8sf7:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812419 8sf7:LG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812420 8sf7:LG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812421 8sf7:LH (4.1) BS01 MG ? GO:0000226 ... P41352 38598282
    812422 8sf7:LH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812423 8sf7:LI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812424 8sf7:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812425 8sf7:LK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812426 8sf7:LK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812427 8sf7:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812428 8sf7:LM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812429 8sf7:LN (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812430 8sf7:LN (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812431 8sf7:MA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812432 8sf7:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812433 8sf7:MC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812434 8sf7:MD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812435 8sf7:MD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812436 8sf7:ME (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812437 8sf7:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812438 8sf7:MG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812439 8sf7:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812440 8sf7:MI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812441 8sf7:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812442 8sf7:MK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812443 8sf7:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812444 8sf7:MM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812445 8sf7:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812446 8sf7:NA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812447 8sf7:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812448 8sf7:NC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812449 8sf7:NC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812450 8sf7:ND (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812451 8sf7:ND (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812452 8sf7:NE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812453 8sf7:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812454 8sf7:NG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812455 8sf7:NG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812456 8sf7:NH (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812457 8sf7:NH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812458 8sf7:NI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812459 8sf7:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812460 8sf7:NK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812461 8sf7:NK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812462 8sf7:NL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812463 8sf7:NL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812464 8sf7:NM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812465 8sf7:NN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812466 8sf7:OA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812467 8sf7:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812468 8sf7:OB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812469 8sf7:OC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812470 8sf7:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812471 8sf7:OE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812472 8sf7:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812473 8sf7:OG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812474 8sf7:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812475 8sf7:OI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812476 8sf7:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812477 8sf7:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812478 8sf7:OK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812479 8sf7:OL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812480 8sf7:OL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812481 8sf7:OM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812482 8sf7:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812483 8sf7:PA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812484 8sf7:PA (4.1) BS02 GDP 3.6.5.- GO:0000226 ... P41351 38598282
    812485 8sf7:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812486 8sf7:PC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812487 8sf7:PD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812488 8sf7:PE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812489 8sf7:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812490 8sf7:PG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812491 8sf7:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812492 8sf7:PI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812493 8sf7:PJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812494 8sf7:PJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812495 8sf7:PK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812496 8sf7:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812497 8sf7:PM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812498 8sf7:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812499 8sf7:QA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812500 8sf7:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812501 8sf7:QB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812502 8sf7:QC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812503 8sf7:QC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812504 8sf7:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812505 8sf7:QE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812506 8sf7:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812507 8sf7:QF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812508 8sf7:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812509 8sf7:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812510 8sf7:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812511 8sf7:QH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812512 8sf7:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812513 8sf7:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812514 8sf7:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812515 8sf7:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812516 8sf7:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812517 8sf7:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812518 8sf7:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812519 8sf7:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812520 8sf7:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812521 8sf7:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812522 8sf7:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812523 8sf7:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812524 8sf7:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812525 8sf7:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812526 8sf7:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812527 8sf7:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812528 8sf7:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812529 8sf7:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812530 8sf7:RL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812531 8sf7:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812532 8sf7:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812533 8sf7:SA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812534 8sf7:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812535 8sf7:SB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812536 8sf7:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812537 8sf7:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812538 8sf7:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812539 8sf7:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812540 8sf7:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812541 8sf7:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812542 8sf7:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812543 8sf7:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812544 8sf7:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812545 8sf7:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812546 8sf7:SL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812547 8sf7:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812548 8sf7:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812549 8sf7:TA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812550 8sf7:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812551 8sf7:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812552 8sf7:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812553 8sf7:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812554 8sf7:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812555 8sf7:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812556 8sf7:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812557 8sf7:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812558 8sf7:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812559 8sf7:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812560 8sf7:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812561 8sf7:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812562 8sf7:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812563 8sf7:UA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812564 8sf7:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812565 8sf7:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812566 8sf7:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812567 8sf7:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812568 8sf7:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812569 8sf7:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812570 8sf7:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812571 8sf7:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812572 8sf7:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812573 8sf7:UJ (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812574 8sf7:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812575 8sf7:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812576 8sf7:UL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812577 8sf7:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812578 8sf7:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812579 8sf7:VA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812580 8sf7:VB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812581 8sf7:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812582 8sf7:VD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812583 8sf7:VD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812584 8sf7:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812585 8sf7:VF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812586 8sf7:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812587 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812588 8sf7:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812589 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812590 8sf7:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812591 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812592 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812593 8sf7:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812594 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812595 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812596 8sf7:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812597 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812598 8sf7:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812599 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812600 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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