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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799801 8oxo:A (3.0) BS03 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799802 8oxo:A (3.0) BS04 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799803 8oxo:B (3.0) BS01 peptide 2.7.11.1 GO:0000077 ... Q13315 37756394
    799804 8oxo:B (3.0) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799805 8oxo:B (3.0) BS03 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799806 8oxo:B (3.0) BS04 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799807 8oxp:A (2.6) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799808 8oxp:A (2.6) BS02 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799809 8oxp:A (2.6) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799810 8oxp:B (2.6) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799811 8oxp:B (2.6) BS02 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799812 8oxp:B (2.6) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799813 8oxq:A (2.5) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799814 8oxq:A (2.5) BS02 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799815 8oxq:A (2.5) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799816 8oxq:B (2.5) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799817 8oxq:B (2.5) BS02 MG 2.7.11.1 GO:0000077 ... Q13315 37756394
    799818 8oxq:B (2.5) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799819 8oxt:AAA (2.003) BS01 ZZ8 1.13.11.48 GO:0003824 ... O31266 37799987
    799820 8oxt:BBB (2.003) BS01 ZZ8 1.13.11.48 GO:0003824 ... O31266 37799987
    799821 8oxu:B (2.94) BS01 W5R ? GO:0005524 ... P02829 37509087
    799822 8oxu:C (2.94) BS01 W5R ? GO:0005524 ... P02829 37509087
    799823 8oxv:A (1.8) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799824 8oxv:A (1.8) BS02 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799825 8oxv:A (1.8) BS03 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799826 8oxw:A (1.7) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799827 8oxw:A (1.7) BS02 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799828 8oxw:A (1.7) BS03 CA 2.3.2.13 GO:0003810 ... Q08188 37798283
    799829 8oxx:A (2.5) BS01 CA 2.3.2.13 GO:0018149 ... Q08188 37798283
    799830 8oxx:A (2.5) BS02 CA 2.3.2.13 GO:0018149 ... Q08188 37798283
    799831 8oxx:A (2.5) BS03 CA 2.3.2.13 GO:0018149 ... Q08188 37798283
    799832 8oxx:A (2.5) BS04 P6S 2.3.2.13 GO:0018149 ... Q08188 37798283
    799833 8oxx:A (2.5) BS05 ONL 2.3.2.13 GO:0018149 ... Q08188 37798283
    799834 8oxx:A (2.5) BS06 DVA 2.3.2.13 GO:0018149 ... Q08188 37798283
    799835 8oy1:A (3.34) BS01 GDP ? GO:0000139 ... P08754 N/A
    799836 8oy2:A (2.618) BS01 W5W 2.7.11.22 GO:0000082 ... P24941 37983497
    799837 8oy3:A (2.16) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799838 8oy3:A (2.16) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799839 8oy3:A (2.16) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799840 8oy3:B (2.16) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799841 8oy3:B (2.16) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799842 8oy3:B (2.16) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799843 8oy4:A (2.35) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799844 8oy4:A (2.35) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799845 8oy4:A (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799846 8oy4:B (2.35) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799847 8oy4:B (2.35) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799848 8oy4:B (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799849 8oy5:A (2.27) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799850 8oy5:A (2.27) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799851 8oy5:A (2.27) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799852 8oy5:B (2.27) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799853 8oy5:B (2.27) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799854 8oy5:B (2.27) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799855 8oy6:A (2.35) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799856 8oy6:A (2.35) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799857 8oy6:A (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799858 8oy6:B (2.35) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799859 8oy6:B (2.35) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799860 8oy6:B (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799861 8oy7:A (2.36) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799862 8oy7:A (2.36) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799863 8oy7:A (2.36) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799864 8oy7:B (2.36) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799865 8oy7:B (2.36) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799866 8oy7:B (2.36) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799867 8oy8:A (2.39) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799868 8oy8:A (2.39) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799869 8oy8:A (2.39) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799870 8oy8:B (2.39) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799871 8oy8:B (2.39) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799872 8oy8:B (2.39) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799873 8oy9:A (2.24) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799874 8oy9:A (2.24) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799875 8oy9:A (2.24) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799876 8oy9:B (2.24) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799877 8oy9:B (2.24) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799878 8oy9:B (2.24) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799879 8oya:A (2.18) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799880 8oya:A (2.18) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799881 8oya:A (2.18) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799882 8oya:B (2.18) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799883 8oya:B (2.18) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799884 8oya:B (2.18) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799885 8oyb:A (2.25) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799886 8oyb:A (2.25) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799887 8oyb:A (2.25) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799888 8oyb:B (2.25) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799889 8oyb:B (2.25) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799890 8oyb:B (2.25) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799891 8oyc:A (2.5) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799892 8oyc:A (2.5) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799893 8oyc:A (2.5) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799894 8oyc:B (2.5) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799895 8oyc:B (2.5) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799896 8oyc:B (2.5) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    799897 8oyf:A (2.1) BS01 NA ? GO:0016020 ... Q9K0A9 37645971
    799898 8oyf:A (2.1) BS02 NA ? GO:0016020 ... Q9K0A9 37645971
    799899 8oyg:A (2.3) BS01 NA ? GO:0016020 ... Q9K0A9 37645971
    799900 8oyg:A (2.3) BS02 NA ? GO:0016020 ... Q9K0A9 37645971
    799901 8oyg:A (2.3) BS03 PAF ? GO:0016020 ... Q9K0A9 37645971
    799902 8oyh:A (1.8) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 38385828
    799903 8oyh:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    799904 8oyh:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    799905 8oyh:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    799906 8oyi:A (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    799907 8oyi:A (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    799908 8oyi:C (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799909 8oyi:C (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799910 8oyi:C (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799911 8oyi:C (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799912 8oyi:E (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    799913 8oyi:E (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    799914 8oyi:G (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799915 8oyi:G (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799916 8oyi:G (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799917 8oyi:G (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799918 8oyi:I (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    799919 8oyi:I (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    799920 8oyi:K (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799921 8oyi:K (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799922 8oyi:K (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799923 8oyi:K (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    799924 8oyk:A (1.9) BS01 peptide ? N/A Q15468 37834064
    799925 8oyk:B (1.9) BS01 peptide ? N/A Q15468 37834064
    799926 8oyk:B (1.9) BS02 peptide ? N/A Q15468 37834064
    799927 8oyk:C (1.9) BS01 peptide ? N/A Q15468 37834064
    799928 8oyk:F (1.9) BS01 peptide ? N/A Q15468 37834064
    799929 8oyq:A (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    799930 8oyq:B (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    799931 8oyz:A (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    799932 8oyz:B (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    799933 8oz0:D (3.5) BS01 rna ? GO:0000423 ... P05198 38287194
    799934 8oz0:D (3.5) BS02 rna ? GO:0000423 ... P05198 38287194
    799935 8oz0:E (3.5) BS01 rna 3.6.5.3 GO:0000049 ... P41091 38287194
    799936 8oz0:G (3.5) BS01 rna ? GO:0000049 ... P47813 38287194
    799937 8oz0:G (3.5) BS02 rna ? GO:0000049 ... P47813 38287194
    799938 8oz0:H (3.5) BS01 rna ? GO:0001732 ... P55010 38287194
    799939 8oz0:H (3.5) BS02 rna ? GO:0001732 ... P55010 38287194
    799940 8oz0:I (3.5) BS01 rna ? GO:0001732 ... P55884 38287194
    799941 8oz0:J (3.5) BS01 rna ? GO:0001732 ... Q99613 38287194
    799942 8oz0:J (3.5) BS02 rna ? GO:0001732 ... Q99613 38287194
    799943 8oz0:L (3.5) BS01 rna ? GO:0001843 ... P62081 38287194
    799944 8oz0:M (3.5) BS01 rna ? GO:0000028 ... P42677 38287194
    799945 8oz0:O (3.5) BS01 rna ? GO:0002181 ... P15880 38287194
    799946 8oz0:P (3.5) BS01 rna ? GO:0002181 ... P61247 38287194
    799947 8oz0:Q (3.5) BS01 rna ? GO:0000028 ... P08865 38287194
    799948 8oz0:R (3.5) BS01 rna ? GO:0002181 ... P62854 38287194
    799949 8oz0:R (3.5) BS02 rna ? GO:0002181 ... P62854 38287194
    799950 8oz0:R (3.5) BS03 ZN ? GO:0002181 ... P62854 38287194
    799951 8oz0:S (3.5) BS01 rna ? GO:0000082 ... P62753 38287194
    799952 8oz0:T (3.5) BS01 rna ? GO:0000028 ... P62263 38287194
    799953 8oz0:U (3.5) BS01 rna ? GO:0001701 ... P20042 38287194
    799954 8oz0:V (3.5) BS01 rna ? GO:0002181 ... P62277 38287194
    799955 8oz0:X (3.5) BS01 rna ? GO:0002181 ... P62280 38287194
    799956 8oz0:Y (3.5) BS01 rna ? GO:0002181 ... P62701 38287194
    799957 8oz0:Z (3.5) BS01 rna ? GO:0002181 ... P46781 38287194
    799958 8oz0:a (3.5) BS01 rna ? GO:0002181 ... P62266 38287194
    799959 8oz0:b (3.5) BS01 rna ? GO:0003735 ... P62861 38287194
    799960 8oz0:c (3.5) BS01 rna ? GO:0002181 ... P62244 38287194
    799961 8oz0:d (3.5) BS01 rna ? GO:0000462 ... P62241 38287194
    799962 8oz0:e (3.5) BS01 rna ? GO:0002181 ... P62847 38287194
    799963 8oz0:f (3.5) BS01 rna ? GO:0000028 ... P46782 38287194
    799964 8oz0:f (3.5) BS02 MG ? GO:0000028 ... P46782 38287194
    799965 8oz0:g (3.5) BS01 rna ? GO:0000462 ... P62249 38287194
    799966 8oz0:h (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    799967 8oz0:h (3.5) BS02 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    799968 8oz0:i (3.5) BS01 rna ? GO:0002181 ... P46783 38287194
    799969 8oz0:j (3.5) BS01 rna ? GO:0000028 ... P62841 38287194
    799970 8oz0:k (3.5) BS01 rna ? GO:0001891 ... P63244 38287194
    799971 8oz0:l (3.5) BS01 rna ? GO:0000028 ... P39019 38287194
    799972 8oz0:m (3.5) BS01 rna ? GO:0002181 ... P62851 38287194
    799973 8oz0:n (3.5) BS01 rna ? GO:0002181 ... P62269 38287194
    799974 8oz0:o (3.5) BS01 rna ? GO:0002181 ... P62273 38287194
    799975 8oz0:p (3.5) BS01 rna ? GO:0002181 ... P62979 38287194
    799976 8oz0:p (3.5) BS02 ZN ? GO:0002181 ... P62979 38287194
    799977 8oz0:q (3.5) BS01 rna ? GO:0002181 ... P25398 38287194
    799978 8oz0:s (3.5) BS01 rna ? GO:0000028 ... P62857 38287194
    799979 8oz0:v (3.5) BS01 rna ? GO:0002181 ... P08708 38287194
    799980 8oz0:w (3.5) BS01 rna ? GO:0002181 ... P60866 38287194
    799981 8oz1:A (1.3) BS01 RBH 3.2.1.4 GO:0000272 ... B3PD52 38161374
    799982 8oz1:A (1.3) BS02 YLL 3.2.1.4 GO:0000272 ... B3PD52 38161374
    799983 8oz2:A (1.04) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    799984 8oz2:A (1.04) BS02 30L 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    799985 8oz6:A (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    799986 8oz6:A (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    799987 8oz6:B (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    799988 8oz6:B (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    799989 8oz6:C (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    799990 8oz6:C (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    799991 8oz6:D (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    799992 8oz6:D (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    799993 8oz6:E (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    799994 8oz6:E (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    799995 8oz6:F (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    799996 8oz6:F (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    799997 8oz6:G (3.97) BS01 rna ? GO:0007165 ... A0A316E683 37467330
    799998 8oz6:G (3.97) BS02 dna ? GO:0007165 ... A0A316E683 37467330
    799999 8oz6:H (3.97) BS01 rna ? GO:0003676 ... A0A316E3U6 37467330
    800000 8oz6:H (3.97) BS02 dna ? GO:0003676 ... A0A316E3U6 37467330
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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