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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799601 8ow3:A (2.27) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    799602 8ow4:A (2.75) BS01 dna ? GO:0003677 ... Q13469 N/A
    799603 8ow4:A (2.75) BS02 dna ? GO:0003677 ... Q13469 N/A
    799604 8ow4:B (2.75) BS01 dna ? GO:0003677 ... Q13469 N/A
    799605 8ow4:B (2.75) BS02 dna ? GO:0003677 ... Q13469 N/A
    799606 8ow4:B (2.75) BS03 dna ? GO:0003677 ... Q13469 N/A
    799607 8ow5:A (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799608 8ow5:A (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799609 8ow5:B (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799610 8ow5:B (2.84) BS02 VEO 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799611 8ow5:B (2.84) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799612 8ow5:C (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799613 8ow5:D (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799614 8ow5:D (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799615 8ow6:A (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    799616 8ow6:A (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    799617 8ow6:A (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    799618 8ow6:A (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    799619 8ow6:A (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    799620 8ow6:A (1.2) BS06 W4O ? GO:0016168 ... Q9FEY4 N/A
    799621 8ow6:A (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    799622 8ow6:A (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    799623 8ow6:C (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    799624 8ow6:C (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    799625 8ow6:C (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    799626 8ow6:C (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    799627 8ow6:C (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    799628 8ow6:C (1.2) BS06 W4O ? GO:0016168 ... Q9FEY4 N/A
    799629 8ow6:C (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    799630 8ow6:C (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    799631 8ow7:A (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799632 8ow7:B (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799633 8ow7:C (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799634 8ow7:D (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799635 8ow7:E (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799636 8ow7:F (3.06) BS01 AMU ? N/A G8UQH1 37481208
    799637 8ow8:A (2.0) BS01 ZN 3.4.24.69 GO:0004222 ... A0A242DI27 37628902
    799638 8ow9:A (2.7) BS01 AMU ? N/A G8UQH9 37481208
    799639 8ow9:B (2.7) BS01 AMU ? N/A G8UQH9 37481208
    799640 8ow9:D (2.7) BS01 AMU ? N/A G8UQH9 37481208
    799641 8ow9:E (2.7) BS01 AMU ? N/A G8UQH9 37481208
    799642 8owa:A (2.85) BS01 VUK 7.2.2.10 GO:0000166 ... P04191 N/A
    799643 8owb:A (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799644 8owb:A (2.25) BS02 VE6 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799645 8owb:B (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799646 8owb:B (2.25) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799647 8owb:C (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799648 8owb:C (2.25) BS02 VE6 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799649 8owb:D (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799650 8owf:A (1.3) BS01 GCS ? GO:0004553 ... F8UNI5 N/A
    799651 8owf:A (1.3) BS02 GCS ? GO:0004553 ... F8UNI5 N/A
    799652 8owf:A (1.3) BS03 GCS ? GO:0004553 ... F8UNI5 N/A
    799653 8owf:A (1.3) BS04 GCS ? GO:0004553 ... F8UNI5 N/A
    799654 8owg:A (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    799655 8owg:B (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    799656 8owg:C (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    799657 8owl:A (3.02) BS01 VSR 7.2.2.10 GO:0000166 ... P04191 N/A
    799658 8owm:A (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799659 8owm:A (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799660 8owm:A (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799661 8owm:B (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799662 8owm:B (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799663 8owm:B (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799664 8owm:C (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799665 8owm:C (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799666 8owm:C (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799667 8owm:D (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799668 8owm:D (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799669 8owm:D (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799670 8owm:E (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799671 8owm:E (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799672 8owm:E (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799673 8owm:F (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    799674 8owm:F (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    799675 8owm:F (1.7) BS03 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799676 8own:A (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799677 8own:B (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799678 8own:C (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799679 8own:D (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799680 8own:E (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799681 8own:F (3.26) BS01 CA 1.4.1.3 GO:0000325 ... Q38946 37478728
    799682 8owo:A (1.8) BS01 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    799683 8owo:A (1.8) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    799684 8owo:A (1.8) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    799685 8owo:A (1.8) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    799686 8owp:A (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799687 8owp:A (1.993) BS02 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799688 8owp:A (1.993) BS03 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799689 8owp:B (1.993) BS01 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799690 8owp:B (1.993) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799691 8owp:C (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799692 8owp:C (1.993) BS02 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799693 8owp:D (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799694 8owq:A (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799695 8owq:A (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799696 8owq:A (2.106) BS03 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799697 8owq:A (2.106) BS04 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799698 8owq:B (2.106) BS01 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799699 8owq:B (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799700 8owq:B (2.106) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799701 8owq:B (2.106) BS04 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799702 8owq:C (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799703 8owq:C (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799704 8owq:C (2.106) BS03 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799705 8owq:D (2.106) BS01 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799706 8owq:D (2.106) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799707 8owr:A (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799708 8owr:A (2.439) BS02 W5E 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799709 8owr:B (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799710 8owr:B (2.439) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799711 8owr:C (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799712 8owr:C (2.439) BS02 W5E 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799713 8owr:D (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    799714 8owx:A (2.601) BS01 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    799715 8owx:B (2.601) BS01 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    799716 8owy:A (3.2) BS01 SAH 2.1.1.- N/A Q8TCB7 38918637
    799717 8owy:B (3.2) BS01 SAH 2.1.1.- N/A Q8TCB7 38918637
    799718 8owz:A (1.65) BS01 KZU 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37902787
    799719 8owz:A (1.65) BS02 BU3 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37902787
    799720 8owz:A (1.65) BS03 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37902787
    799721 8ox0:A (2.52) BS01 dna ? GO:0000786 ... P68431 37624885
    799722 8ox0:A (2.52) BS02 dna ? GO:0000786 ... P68431 37624885
    799723 8ox0:B (2.52) BS01 dna ? GO:0000781 ... P62805 37624885
    799724 8ox0:B (2.52) BS02 dna ? GO:0000781 ... P62805 37624885
    799725 8ox0:C (2.52) BS01 dna ? GO:0000786 ... Q93077 37624885
    799726 8ox0:C (2.52) BS02 dna ? GO:0000786 ... Q93077 37624885
    799727 8ox0:D (2.52) BS01 dna ? GO:0000786 ... P62807 37624885
    799728 8ox0:D (2.52) BS02 dna ? GO:0000786 ... P62807 37624885
    799729 8ox0:E (2.52) BS01 dna ? GO:0000786 ... P68431 37624885
    799730 8ox0:E (2.52) BS02 dna ? GO:0000786 ... P68431 37624885
    799731 8ox0:F (2.52) BS01 dna ? GO:0000781 ... P62805 37624885
    799732 8ox0:F (2.52) BS02 dna ? GO:0000781 ... P62805 37624885
    799733 8ox0:G (2.52) BS01 dna ? GO:0000786 ... Q93077 37624885
    799734 8ox0:G (2.52) BS02 dna ? GO:0000786 ... Q93077 37624885
    799735 8ox0:H (2.52) BS01 dna ? GO:0000786 ... P62807 37624885
    799736 8ox0:H (2.52) BS02 dna ? GO:0000786 ... P62807 37624885
    799737 8ox1:A (2.7) BS01 dna ? GO:0000786 ... P68431 37624885
    799738 8ox1:A (2.7) BS02 dna ? GO:0000786 ... P68431 37624885
    799739 8ox1:B (2.7) BS01 dna ? GO:0000781 ... P62805 37624885
    799740 8ox1:B (2.7) BS02 dna ? GO:0000781 ... P62805 37624885
    799741 8ox1:C (2.7) BS01 dna ? GO:0000786 ... Q93077 37624885
    799742 8ox1:C (2.7) BS02 dna ? GO:0000786 ... Q93077 37624885
    799743 8ox1:D (2.7) BS01 dna ? GO:0000786 ... P62807 37624885
    799744 8ox1:D (2.7) BS02 dna ? GO:0000786 ... P62807 37624885
    799745 8ox1:E (2.7) BS01 dna ? GO:0000786 ... P68431 37624885
    799746 8ox1:E (2.7) BS02 dna ? GO:0000786 ... P68431 37624885
    799747 8ox1:F (2.7) BS01 dna ? GO:0000781 ... P62805 37624885
    799748 8ox1:F (2.7) BS02 dna ? GO:0000781 ... P62805 37624885
    799749 8ox1:G (2.7) BS01 dna ? GO:0000786 ... Q93077 37624885
    799750 8ox1:G (2.7) BS02 dna ? GO:0000786 ... Q93077 37624885
    799751 8ox1:H (2.7) BS01 dna ? GO:0000786 ... P62807 37624885
    799752 8ox1:H (2.7) BS02 dna ? GO:0000786 ... P62807 37624885
    799753 8ox1:L (2.7) BS01 dna ? GO:0000723 ... P54274 37624885
    799754 8ox1:L (2.7) BS02 dna ? GO:0000723 ... P54274 37624885
    799755 8ox1:M (2.7) BS01 dna ? GO:0000723 ... P54274 37624885
    799756 8ox1:M (2.7) BS02 dna ? GO:0000723 ... P54274 37624885
    799757 8ox4:A (3.4) BS01 ACP 7.6.2.1 GO:0000166 ... O43520 37980352
    799758 8ox4:A (3.4) BS02 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799759 8ox5:A (2.9) BS01 ADP 7.6.2.1 GO:0000166 ... O43520 37980352
    799760 8ox5:A (2.9) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    799761 8ox5:A (2.9) BS03 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799762 8ox6:A (2.39) BS01 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799763 8ox6:A (2.39) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    799764 8ox7:A (2.56) BS01 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799765 8ox7:A (2.56) BS02 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    799766 8ox8:A (2.98) BS01 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799767 8ox8:A (2.98) BS02 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    799768 8ox9:A (2.72) BS01 BEF 7.6.2.1 GO:0000166 ... O43520 37980352
    799769 8ox9:A (2.72) BS02 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799770 8ox9:A (2.72) BS03 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    799771 8oxa:A (2.76) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    799772 8oxa:A (2.76) BS02 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799773 8oxa:A (2.76) BS03 D39 7.6.2.1 GO:0000166 ... O43520 37980352
    799774 8oxb:A (2.99) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    799775 8oxb:A (2.99) BS02 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799776 8oxc:A (2.58) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    799777 8oxc:A (2.58) BS02 MG 7.6.2.1 GO:0000166 ... O43520 37980352
    799778 8oxc:A (2.58) BS03 PIE 7.6.2.1 GO:0000166 ... O43520 37980352
    799779 8oxe:A (2.26) BS01 ADP 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    799780 8oxe:A (2.26) BS02 MG 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    799781 8oxe:A (2.26) BS03 MG 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    799782 8oxe:A (2.26) BS04 MG 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    799783 8oxg:A (1.731) BS01 W5N 3.4.11.18 GO:0006508 ... P50579 38530115
    799784 8oxg:A (1.731) BS02 MN 3.4.11.18 GO:0006508 ... P50579 38530115
    799785 8oxg:A (1.731) BS03 MN 3.4.11.18 GO:0006508 ... P50579 38530115
    799786 8oxg:B (1.731) BS01 W5N 3.4.11.18 GO:0006508 ... P50579 38530115
    799787 8oxg:B (1.731) BS02 MN 3.4.11.18 GO:0006508 ... P50579 38530115
    799788 8oxg:B (1.731) BS03 MN 3.4.11.18 GO:0006508 ... P50579 38530115
    799789 8oxm:A (3.3) BS01 peptide 2.7.11.1 GO:0000077 ... Q13315 37756394
    799790 8oxm:A (3.3) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799791 8oxm:A (3.3) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799792 8oxm:B (3.3) BS01 peptide 2.7.11.1 GO:0000077 ... Q13315 37756394
    799793 8oxm:B (3.3) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    799794 8oxm:B (3.3) BS03 ZN 2.7.11.1 GO:0000077 ... Q13315 37756394
    799795 8oxn:AAA (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    799796 8oxn:BBB (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    799797 8oxn:CCC (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    799798 8oxn:DDD (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    799799 8oxo:A (3.0) BS01 peptide 2.7.11.1 GO:0000077 ... Q13315 37756394
    799800 8oxo:A (3.0) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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