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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798001 8op2:Q (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798002 8op2:S (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798003 8op2:T (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798004 8op2:c (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798005 8op2:d (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798006 8op2:g (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798007 8op2:h (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798008 8op2:k (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798009 8op2:l (2.8) BS01 rna ? GO:0003723 ... P03418 37714861
    798010 8op9:A (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    798011 8op9:A (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    798012 8op9:B (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    798013 8op9:B (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    798014 8op9:C (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    798015 8op9:D (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    798016 8op9:E (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    798017 8op9:E (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    798018 8opc:Aa (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798019 8opc:Ac (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798020 8opc:Ae (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798021 8opc:Ag (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798022 8opc:Ai (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798023 8opc:Ak (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798024 8opc:Am (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798025 8opc:Ao (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798026 8opc:Aq (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798027 8opc:As (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798028 8opc:Au (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798029 8opc:Aw (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798030 8opc:Ay (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798031 8opc:Ba (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798032 8opc:Bc (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798033 8opc:Be (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798034 8opc:Bg (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798035 8opc:Bi (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798036 8opc:Bk (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798037 8opc:Bm (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798038 8opc:Bo (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798039 8opc:Bq (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798040 8opc:Bs (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798041 8opc:Bu (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798042 8opc:Bw (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798043 8opc:By (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798044 8opc:Ca (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798045 8opc:Cc (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    798046 8ope:Aa (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798047 8ope:Ac (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798048 8ope:Ae (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798049 8ope:Ag (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798050 8ope:Ai (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798051 8ope:Ak (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798052 8ope:Am (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798053 8ope:Ao (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798054 8ope:Aq (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798055 8ope:As (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798056 8ope:Au (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798057 8ope:Aw (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798058 8ope:Ay (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798059 8ope:Ba (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798060 8ope:Bc (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798061 8ope:Be (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798062 8ope:Bg (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798063 8ope:Bi (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798064 8ope:Bk (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798065 8ope:Bm (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798066 8ope:Bo (3.09) BS01 rna ? GO:0019028 ... A0A0A7DJG2 38233506
    798067 8opl:Aa (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798068 8opl:Ab (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798069 8opl:Ac (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798070 8opl:Ad (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798071 8opl:Ae (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798072 8opl:Af (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798073 8opl:Ag (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798074 8opl:Ah (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798075 8opl:Ai (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798076 8opl:As (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798077 8opl:At (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798078 8opl:Au (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798079 8opl:Av (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798080 8opl:Aw (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798081 8opl:Ax (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798082 8opl:Ay (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798083 8opl:Az (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798084 8opl:Ba (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798085 8opl:Bk (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798086 8opl:Bl (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798087 8opl:Bm (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798088 8opl:Bn (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798089 8opl:Bo (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798090 8opl:Bp (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798091 8opl:Bq (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798092 8opl:Br (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798093 8opl:Bs (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    798094 8opm:A (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798095 8opm:A (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798096 8opm:B (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798097 8opm:B (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798098 8opm:C (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798099 8opm:C (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798100 8opn:A (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798101 8opn:A (4.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798102 8opn:B (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798103 8opn:B (4.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798104 8opn:C (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798105 8opn:C (4.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798106 8opo:A (3.6) BS01 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798107 8opo:B (3.6) BS01 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798108 8opo:C (3.6) BS01 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    798109 8opr:A (1.811) BS01 CA ? N/A P94217 37923757
    798110 8opr:A (1.811) BS02 CA ? N/A P94217 37923757
    798111 8opr:A (1.811) BS03 CA ? N/A P94217 37923757
    798112 8opu:A (3.04) BS01 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    798113 8opu:B (3.04) BS01 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    798114 8opu:B (3.04) BS02 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    798115 8opu:C (3.04) BS01 08D 2.3.1.- GO:0005886 ... O53871 39012716
    798116 8opu:D (3.04) BS01 08D 2.3.1.- GO:0005886 ... O53871 39012716
    798117 8opv:A (2.8) BS01 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    798118 8opv:A (2.8) BS02 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    798119 8opv:B (2.8) BS01 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    798120 8opv:B (2.8) BS02 STL 1.1.1.35 GO:0000166 ... O53872 39012716
    798121 8opx:C (2.9) BS01 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    798122 8opx:D (2.9) BS01 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    798123 8opx:D (2.9) BS02 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    798124 8opy:D (2.45) BS01 DNQ 2.3.1.- GO:0005886 ... O53871 39012716
    798125 8oq2:A (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798126 8oq2:B (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798127 8oq2:B (1.91) BS02 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798128 8oq2:B (1.91) BS03 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798129 8oq2:B (1.91) BS04 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798130 8oq2:C (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798131 8oq2:C (1.91) BS02 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798132 8oq2:D (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798133 8oq2:E (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798134 8oq2:F (1.91) BS01 NAP 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    798135 8oq6:A (3.21) BS01 7P9 ? GO:0004888 ... P24046 37659407
    798136 8oq6:B (3.21) BS01 7P9 ? GO:0004888 ... P24046 37659407
    798137 8oq6:C (3.21) BS01 7P9 ? GO:0004888 ... P24046 37659407
    798138 8oq6:D (3.21) BS01 7P9 ? GO:0004888 ... P24046 37659407
    798139 8oq6:E (3.21) BS01 7P9 ? GO:0004888 ... P24046 37659407
    798140 8oq7:A (2.2) BS01 VZA ? GO:0004888 ... P24046 37659407
    798141 8oq7:B (2.2) BS01 VZA ? GO:0004888 ... P24046 37659407
    798142 8oq7:C (2.2) BS01 VZA ? GO:0004888 ... P24046 37659407
    798143 8oq7:D (2.2) BS01 VZA ? GO:0004888 ... P24046 37659407
    798144 8oq7:E (2.2) BS01 VZA ? GO:0004888 ... P24046 37659407
    798145 8oq8:A (2.9) BS01 RI5 ? GO:0004888 ... P24046 37659407
    798146 8oq8:E (2.9) BS01 RI5 ? GO:0004888 ... P24046 37659407
    798147 8oq9:A (1.65) BS01 ZN 2.7.11.1 N/A Q8WZ42 37549721
    798148 8oq9:B (1.65) BS01 ZN 2.7.11.1 N/A Q8WZ42 37549721
    798149 8oq9:C (1.65) BS01 ZN 2.7.11.1 N/A Q8WZ42 37549721
    798150 8oqa:A (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    798151 8oqa:A (2.9) BS02 RI5 ? GO:0004888 ... P24046 37659407
    798152 8oqa:B (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    798153 8oqa:B (2.9) BS02 RI5 ? GO:0004888 ... P24046 37659407
    798154 8oqa:C (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    798155 8oqa:D (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    798156 8oqa:D (2.9) BS02 ABU ? GO:0004888 ... P24046 37659407
    798157 8oqa:E (2.9) BS01 ABU ? GO:0004888 ... P24046 37659407
    798158 8oqc:A (1.5) BS01 D1O 4.6.1.18 GO:0003676 ... P61823 37144589
    798159 8oqc:A (1.5) BS02 VVU 4.6.1.18 GO:0003676 ... P61823 37144589
    798160 8oqd:A (1.54) BS01 D1O 4.6.1.18 GO:0003676 ... P61823 37144589
    798161 8oqd:A (1.54) BS02 VVU 4.6.1.18 GO:0003676 ... P61823 37144589
    798162 8oqe:A (1.5) BS01 VVU 4.6.1.18 GO:0003676 ... P61823 37144589
    798163 8oqe:A (1.5) BS02 D1O 4.6.1.18 GO:0003676 ... P61823 37144589
    798164 8oqf:A (1.5) BS01 VVU 4.6.1.18 GO:0003676 ... P61823 37144589
    798165 8oqg:A (1.6) BS01 VVU 4.6.1.18 GO:0003676 ... P61823 37144589
    798166 8oqg:A (1.6) BS02 VW5 4.6.1.18 GO:0003676 ... P61823 37144589
    798167 8oqh:A (1.76) BS01 ZN 3.1.3.78 GO:0034597 ... Q86T03 N/A
    798168 8oqh:A (1.76) BS02 ZN 3.1.3.78 GO:0034597 ... Q86T03 N/A
    798169 8oqh:B (1.76) BS01 ZN 3.1.3.78 GO:0034597 ... Q86T03 N/A
    798170 8oqh:B (1.76) BS02 ZN 3.1.3.78 GO:0034597 ... Q86T03 N/A
    798171 8oqj:B (1.64) BS01 ZN 2.3.1.12 GO:0016746 ... P06959 38324697
    798172 8oql:A (2.7) BS01 ARF 1.1.1.35 GO:0000166 ... O53872 39012716
    798173 8oql:A (2.7) BS02 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798174 8oql:A (2.7) BS03 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798175 8oql:A (2.7) BS04 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798176 8oql:A (2.7) BS05 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798177 8oql:A (2.7) BS06 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798178 8oql:A (2.7) BS07 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798179 8oql:B (2.7) BS01 ARF 1.1.1.35 GO:0000166 ... O53872 39012716
    798180 8oql:B (2.7) BS02 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798181 8oql:B (2.7) BS03 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798182 8oql:B (2.7) BS04 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798183 8oql:B (2.7) BS05 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798184 8oql:B (2.7) BS06 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798185 8oql:B (2.7) BS07 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798186 8oql:B (2.7) BS08 A9J 1.1.1.35 GO:0000166 ... O53872 39012716
    798187 8oql:C (2.7) BS01 A9J 2.3.1.- GO:0005886 ... O53871 39012716
    798188 8oql:C (2.7) BS02 A9J 2.3.1.- GO:0005886 ... O53871 39012716
    798189 8oql:D (2.7) BS01 A9J 2.3.1.- GO:0005886 ... O53871 39012716
    798190 8oql:D (2.7) BS02 A9J 2.3.1.- GO:0005886 ... O53871 39012716
    798191 8oql:D (2.7) BS03 A9J 2.3.1.- GO:0005886 ... O53871 39012716
    798192 8oqm:D (3.2) BS01 VWO 2.3.1.- GO:0005886 ... O53871 39012716
    798193 8oqn:A (2.2) BS01 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798194 8oqn:A (2.2) BS02 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798195 8oqn:A (2.2) BS03 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798196 8oqn:A (2.2) BS04 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798197 8oqn:A (2.2) BS05 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798198 8oqn:A (2.2) BS06 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798199 8oqn:B (2.2) BS01 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    798200 8oqn:B (2.2) BS02 W3U 1.1.1.35 GO:0000166 ... O53872 39012716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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