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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    796601 8oin:Bj (3.6) BS01 rna ? GO:0003723 ... A0A287AF82 37141370
    796602 8oin:Bl (3.6) BS01 rna ? GO:0003735 ... A0A287A731 37141370
    796603 8oin:Bl (3.6) BS02 ZN ? GO:0003735 ... A0A287A731 37141370
    796604 8oin:Bm (3.6) BS01 rna ? GO:0003735 ... A0A287BIV6 37141370
    796605 8oin:Bn (3.6) BS01 rna ? GO:0005739 ... F1RW03 37141370
    796606 8oin:Bn (3.6) BS02 rna ? GO:0005739 ... F1RW03 37141370
    796607 8oin:Bp (3.6) BS01 rna ? GO:0005739 ... A0A286ZP98 37141370
    796608 8oin:Bp (3.6) BS02 rna ? GO:0005739 ... A0A286ZP98 37141370
    796609 8oin:Bq (3.6) BS01 rna ? GO:0003735 ... A0A8D1BPA5 37141370
    796610 8oin:Bq (3.6) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    796611 8oin:Br (3.6) BS01 rna ? GO:0005739 ... A0A287BQA1 37141370
    796612 8oin:Bs (3.6) BS01 rna ? GO:0003735 ... F1S8U4 37141370
    796613 8oin:Bt (3.6) BS01 rna ? GO:0003723 ... F1SR64 37141370
    796614 8oin:Bu (3.6) BS01 rna ? GO:0005739 ... I3LGM5 37141370
    796615 8oin:Bv (3.6) BS01 rna ? GO:0003735 ... F1SRT0 37141370
    796616 8oin:Bv (3.6) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    796617 8oin:Bw (3.6) BS01 rna ? GO:0005739 ... A0A480J9Z6 37141370
    796618 8oin:Bw (3.6) BS02 rna ? GO:0005739 ... A0A480J9Z6 37141370
    796619 8oin:Bx (3.6) BS01 rna ? GO:0003735 ... A0A0R4J8D6 37141370
    796620 8oin:Bz (3.6) BS01 rna ? GO:0003735 ... A0A8D1VKN8 37141370
    796621 8oio:A (1.954) BS01 peptide ? N/A Q53G59 N/A
    796622 8oio:B (1.954) BS01 peptide ? N/A Q53G59 N/A
    796623 8oio:C (1.954) BS01 peptide ? N/A Q53G59 N/A
    796624 8oio:D (1.954) BS01 peptide ? N/A Q53G59 N/A
    796625 8oip:AB (3.6) BS01 peptide ? GO:0003735 ... F1SG95 37141370
    796626 8oip:AB (3.6) BS02 rna ? GO:0003735 ... F1SG95 37141370
    796627 8oip:AC (3.6) BS01 rna ? GO:0005739 ... A0A287ANU4 37141370
    796628 8oip:AD (3.6) BS01 rna ? GO:0005634 ... A0A8D2A802 37141370
    796629 8oip:AE (3.6) BS01 rna ? GO:0003735 ... A0A4X1TSM9 37141370
    796630 8oip:AF (3.6) BS01 rna ? GO:0000028 ... A0A286ZJ25 37141370
    796631 8oip:AH (3.6) BS01 peptide ? GO:0005739 ... F1RUU2 37141370
    796632 8oip:AH (3.6) BS02 rna ? GO:0005739 ... F1RUU2 37141370
    796633 8oip:AJ (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL52 37141370
    796634 8oip:AK (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL53 37141370
    796635 8oip:AL (3.6) BS01 rna ? GO:0003735 ... A0A287AKS1 37141370
    796636 8oip:AM (3.6) BS01 rna ? GO:0003735 ... A0A480JTD7 37141370
    796637 8oip:AN (3.6) BS01 rna ? GO:0003735 ... A0A8D1UDM1 37141370
    796638 8oip:AO (3.6) BS01 rna ? GO:0003735 ... Q767K8 37141370
    796639 8oip:AO (3.6) BS02 ZN ? GO:0003735 ... Q767K8 37141370
    796640 8oip:AP (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL54 37141370
    796641 8oip:AP (3.6) BS02 FS2 ? GO:0003735 ... A0A0M3KL54 37141370
    796642 8oip:AQ (3.6) BS01 rna ? GO:0003735 ... A0A286ZNB3 37141370
    796643 8oip:AS (3.6) BS01 rna ? GO:0003735 ... A0A287AEW3 37141370
    796644 8oip:AT (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL55 37141370
    796645 8oip:AT (3.6) BS02 FS2 ? GO:0003735 ... A0A0M3KL55 37141370
    796646 8oip:AU (3.6) BS01 rna ? GO:0005763 ... A0A287AY01 37141370
    796647 8oip:AV (3.6) BS01 peptide ? N/A A0A5G2R1I0 37141370
    796648 8oip:AV (3.6) BS02 rna ? N/A A0A5G2R1I0 37141370
    796649 8oip:AX (3.6) BS01 rna ? GO:0005654 ... A0A8D1XNL0 37141370
    796650 8oip:AX (3.6) BS02 ATP ? GO:0005654 ... A0A8D1XNL0 37141370
    796651 8oip:AX (3.6) BS03 GDP ? GO:0005654 ... A0A8D1XNL0 37141370
    796652 8oip:AZ (3.6) BS01 peptide ? GO:0005739 ... A0A4X1V2H3 37141370
    796653 8oip:AZ (3.6) BS02 rna ? GO:0005739 ... A0A4X1V2H3 37141370
    796654 8oip:Aa (3.6) BS01 rna ? GO:0003747 ... O75570 37141370
    796655 8oip:Aa (3.6) BS02 rna ? GO:0003747 ... O75570 37141370
    796656 8oip:Aa (3.6) BS03 rna ? GO:0003747 ... O75570 37141370
    796657 8oip:Ab (3.6) BS01 rna ? GO:0003735 ... F1S001 37141370
    796658 8oip:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    796659 8oip:Ac (3.6) BS01 rna ? GO:0005739 ... A0A4X1SZV4 37141370
    796660 8oip:Ad (3.6) BS01 rna ? GO:0003723 ... F1SU66 37141370
    796661 8oip:Ad (3.6) BS02 rna ? GO:0003723 ... F1SU66 37141370
    796662 8oip:Ag (3.6) BS01 rna ? GO:0003723 ... I3LU08 37141370
    796663 8oip:Ag (3.6) BS02 rna ? GO:0003723 ... I3LU08 37141370
    796664 8oip:Ai (3.6) BS01 rna ? GO:0003735 ... A0A286ZJJ6 37141370
    796665 8oip:Aj (3.6) BS01 rna ? GO:0003735 ... A0A287AVS9 37141370
    796666 8oiq:Aa (3.5) BS01 rna ? GO:0003747 ... O75570 37141370
    796667 8oiq:Aa (3.5) BS02 rna ? GO:0003747 ... O75570 37141370
    796668 8oiq:B1 (3.5) BS01 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    796669 8oiq:B1 (3.5) BS02 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    796670 8oiq:BA (3.5) BS01 rna ? GO:0003735 ... A0A4X1TXR4 37141370
    796671 8oiq:BB (3.5) BS01 rna ? GO:0003735 ... A0A480JJI1 37141370
    796672 8oiq:BC (3.5) BS01 rna ? GO:0003723 ... F1RHJ1 37141370
    796673 8oiq:BD (3.5) BS01 rna ? GO:0003735 ... A0A4X1U0F6 37141370
    796674 8oiq:BE (3.5) BS01 rna ? GO:0003735 ... A0A286ZTW8 37141370
    796675 8oiq:BF (3.5) BS01 rna ? GO:0003735 ... F1SGC7 37141370
    796676 8oiq:BG (3.5) BS01 rna ? GO:0003735 ... A0A8D0VJF4 37141370
    796677 8oiq:BH (3.5) BS01 rna ? GO:0003735 ... I3LTC4 37141370
    796678 8oiq:BH (3.5) BS02 ZN ? GO:0003735 ... I3LTC4 37141370
    796679 8oiq:BI (3.5) BS01 rna ? GO:0003735 ... A0A4X1TLP9 37141370
    796680 8oiq:BJ (3.5) BS01 rna ? GO:0003735 ... A0A8D1JE64 37141370
    796681 8oiq:BK (3.5) BS01 rna ? GO:0003735 ... A0A5G2QZK0 37141370
    796682 8oiq:BL (3.5) BS01 rna ? GO:0003723 ... A0A287A143 37141370
    796683 8oiq:BM (3.5) BS01 rna ? GO:0003735 ... A0A140UHW4 37141370
    796684 8oiq:BN (3.5) BS01 rna ? GO:0003735 ... A0A287B9C4 37141370
    796685 8oiq:BO (3.5) BS01 rna ? GO:0003735 ... I3LR45 37141370
    796686 8oiq:BP (3.5) BS01 peptide ? GO:0005840 ... F1RWJ0 37141370
    796687 8oiq:BP (3.5) BS02 peptide ? GO:0005840 ... F1RWJ0 37141370
    796688 8oiq:BP (3.5) BS03 peptide ? GO:0005840 ... F1RWJ0 37141370
    796689 8oiq:BP (3.5) BS04 peptide ? GO:0005840 ... F1RWJ0 37141370
    796690 8oiq:BP (3.5) BS05 rna ? GO:0005840 ... F1RWJ0 37141370
    796691 8oiq:BP (3.5) BS06 FES ? GO:0005840 ... F1RWJ0 37141370
    796692 8oiq:BQ (3.5) BS01 rna ? GO:0003735 ... F1RU54 37141370
    796693 8oiq:BR (3.5) BS01 rna ? GO:0003729 ... K7GP19 37141370
    796694 8oiq:BS (3.5) BS01 rna ? GO:0003735 ... A0A287BMZ6 37141370
    796695 8oiq:BT (3.5) BS01 rna ? GO:0003735 ... A0A8D0HMG9 37141370
    796696 8oiq:BU (3.5) BS01 rna ? GO:0003735 ... F1RI89 37141370
    796697 8oiq:BV (3.5) BS01 rna ? GO:0003735 ... F1RMQ4 37141370
    796698 8oiq:BW (3.5) BS01 rna ? GO:0003735 ... A0A4X1VX01 37141370
    796699 8oiq:BW (3.5) BS02 rna ? GO:0003735 ... A0A4X1VX01 37141370
    796700 8oiq:BX (3.5) BS01 rna ? GO:0003735 ... I3LNJ0 37141370
    796701 8oiq:BY (3.5) BS01 rna ? GO:0003735 ... A0A286ZU56 37141370
    796702 8oiq:BZ (3.5) BS01 rna ? GO:0003723 ... F1RY70 37141370
    796703 8oiq:Ba (3.5) BS01 rna ? GO:0003735 ... F1S9B7 37141370
    796704 8oiq:Bc (3.5) BS01 rna ? N/A I3LN63 37141370
    796705 8oiq:Bd (3.5) BS01 rna ? GO:0003735 ... A0A4X1ULI6 37141370
    796706 8oiq:Be (3.5) BS01 rna ? GO:0003735 ... A0A287BP93 37141370
    796707 8oiq:Bg (3.5) BS01 rna ? GO:0005634 ... A0A286ZXA6 37141370
    796708 8oiq:Bh (3.5) BS01 rna ? GO:0003735 ... F1RRH6 37141370
    796709 8oiq:Bh (3.5) BS02 FES ? GO:0003735 ... F1RRH6 37141370
    796710 8oiq:Bi (3.5) BS01 rna ? GO:0003735 ... A0A480QIM3 37141370
    796711 8oiq:Bj (3.5) BS01 rna ? GO:0003723 ... A0A287AF82 37141370
    796712 8oiq:Bl (3.5) BS01 rna ? GO:0003735 ... A0A287A731 37141370
    796713 8oiq:Bl (3.5) BS02 ZN ? GO:0003735 ... A0A287A731 37141370
    796714 8oiq:Bm (3.5) BS01 rna ? GO:0003735 ... A0A287BIV6 37141370
    796715 8oiq:Bn (3.5) BS01 rna ? GO:0005739 ... F1RW03 37141370
    796716 8oiq:Bn (3.5) BS02 rna ? GO:0005739 ... F1RW03 37141370
    796717 8oiq:Bp (3.5) BS01 rna ? GO:0005739 ... A0A286ZP98 37141370
    796718 8oiq:Bp (3.5) BS02 rna ? GO:0005739 ... A0A286ZP98 37141370
    796719 8oiq:Bq (3.5) BS01 rna ? GO:0003735 ... A0A8D1BPA5 37141370
    796720 8oiq:Bq (3.5) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    796721 8oiq:Br (3.5) BS01 rna ? GO:0005739 ... A0A287BQA1 37141370
    796722 8oiq:Bs (3.5) BS01 rna ? GO:0003735 ... F1S8U4 37141370
    796723 8oiq:Bt (3.5) BS01 rna ? GO:0003723 ... F1SR64 37141370
    796724 8oiq:Bu (3.5) BS01 rna ? GO:0005739 ... I3LGM5 37141370
    796725 8oiq:Bv (3.5) BS01 rna ? GO:0003735 ... F1SRT0 37141370
    796726 8oiq:Bv (3.5) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    796727 8oiq:Bw (3.5) BS01 rna ? GO:0005739 ... A0A480J9Z6 37141370
    796728 8oiq:Bw (3.5) BS02 rna ? GO:0005739 ... A0A480J9Z6 37141370
    796729 8oiq:Bx (3.5) BS01 rna ? GO:0003735 ... A0A287A0K2 37141370
    796730 8oiq:Bz (3.5) BS01 rna ? GO:0003735 ... A0A8D1VKN8 37141370
    796731 8oir:AC (3.1) BS01 rna ? GO:0003723 ... Q96EL2 37141370
    796732 8oir:AD (3.1) BS01 rna ? GO:0005515 ... Q9NWT8 37141370
    796733 8oir:AD (3.1) BS02 rna ? GO:0005515 ... Q9NWT8 37141370
    796734 8oir:AE (3.1) BS01 rna ? GO:0003735 ... P82932 37141370
    796735 8oir:AF (3.1) BS01 rna ? GO:0000028 ... Q9Y2R9 37141370
    796736 8oir:AH (3.1) BS01 rna ? GO:0003674 ... P82664 37141370
    796737 8oir:AJ (3.1) BS01 rna ? GO:0003723 ... O15235 37141370
    796738 8oir:AK (3.1) BS01 rna ? GO:0003723 ... O60783 37141370
    796739 8oir:AL (3.1) BS01 rna ? GO:0003723 ... P82914 37141370
    796740 8oir:AM (3.1) BS01 rna ? GO:0003735 ... Q9Y3D3 37141370
    796741 8oir:AN (3.1) BS01 rna ? GO:0003735 ... Q9Y2R5 37141370
    796742 8oir:AO (3.1) BS01 rna ? GO:0003735 ... Q9Y676 37141370
    796743 8oir:AO (3.1) BS02 ZN ? GO:0003735 ... Q9Y676 37141370
    796744 8oir:AP (3.1) BS01 rna ? GO:0003735 ... Q9Y3D5 37141370
    796745 8oir:AP (3.1) BS02 FS2 ? GO:0003735 ... Q9Y3D5 37141370
    796746 8oir:AQ (3.1) BS01 rna ? GO:0003723 ... P82921 37141370
    796747 8oir:AS (3.1) BS01 rna ? GO:0003723 ... Q9Y3D9 37141370
    796748 8oir:AT (3.1) BS01 rna ? GO:0003735 ... P82663 37141370
    796749 8oir:AT (3.1) BS02 FS2 ? GO:0003735 ... P82663 37141370
    796750 8oir:AU (3.1) BS01 rna ? GO:0003723 ... Q9BYN8 37141370
    796751 8oir:AV (3.1) BS01 rna ? GO:0000049 ... Q92552 37141370
    796752 8oir:AX (3.1) BS01 rna ? GO:0003723 ... P51398 37141370
    796753 8oir:AX (3.1) BS02 ATP ? GO:0003723 ... P51398 37141370
    796754 8oir:AX (3.1) BS03 GDP ? GO:0003723 ... P51398 37141370
    796755 8oir:AZ (3.1) BS01 rna ? GO:0003735 ... Q9Y291 37141370
    796756 8oir:Aa (3.1) BS01 rna ? GO:0003747 ... O75570 37141370
    796757 8oir:Aa (3.1) BS02 rna ? GO:0003747 ... O75570 37141370
    796758 8oir:Aa (3.1) BS03 rna ? GO:0003747 ... O75570 37141370
    796759 8oir:Aa (3.1) BS04 rna ? GO:0003747 ... O75570 37141370
    796760 8oir:Ab (3.1) BS01 rna ? GO:0003735 ... Q9Y399 37141370
    796761 8oir:Ab (3.1) BS02 MG ? GO:0003735 ... Q9Y399 37141370
    796762 8oir:Ac (3.1) BS01 rna ? GO:0001650 ... Q96BP2 37141370
    796763 8oir:Ad (3.1) BS01 rna ? GO:0003723 ... P82675 37141370
    796764 8oir:Ad (3.1) BS02 rna ? GO:0003723 ... P82675 37141370
    796765 8oir:Ad (3.1) BS03 MG ? GO:0003723 ... P82675 37141370
    796766 8oir:Ae (3.1) BS01 rna ? GO:0003723 ... Q96EY7 37141370
    796767 8oir:Ag (3.1) BS01 rna ? GO:0003723 ... P82933 37141370
    796768 8oir:Ai (3.1) BS01 rna ? GO:0003723 ... P82912 37141370
    796769 8oir:Aj (3.1) BS01 rna ? GO:0003735 ... P82930 37141370
    796770 8oir:BA (3.1) BS01 rna ? GO:0003723 ... Q9NWU5 37141370
    796771 8oir:BB (3.1) BS01 rna ? GO:0001650 ... Q16540 37141370
    796772 8oir:BC (3.1) BS01 rna ? GO:0003723 ... Q96A35 37141370
    796773 8oir:BD (3.1) BS01 rna ? GO:0003723 ... Q9P0M9 37141370
    796774 8oir:BE (3.1) BS01 rna ? GO:0003723 ... Q13084 37141370
    796775 8oir:BF (3.1) BS01 rna ? GO:0003674 ... Q9HD33 37141370
    796776 8oir:BG (3.1) BS01 rna ? GO:0003735 ... Q8TCC3 37141370
    796777 8oir:BH (3.1) BS01 rna ? GO:0003723 ... Q9BYC8 37141370
    796778 8oir:BH (3.1) BS02 ZN ? GO:0003723 ... Q9BYC8 37141370
    796779 8oir:BI (3.1) BS01 rna ? GO:0003735 ... O75394 37141370
    796780 8oir:BJ (3.1) BS01 rna ? GO:0003735 ... Q9BQ48 37141370
    796781 8oir:BK (3.1) BS01 rna ? GO:0003735 ... Q9NZE8 37141370
    796782 8oir:BL (3.1) BS01 rna ? GO:0003723 ... Q5T653 37141370
    796783 8oir:BM (3.1) BS01 rna ? GO:0003723 ... P09001 37141370
    796784 8oir:BN (3.1) BS01 rna ? GO:0003723 ... Q9BYD3 37141370
    796785 8oir:BO (3.1) BS01 rna ? GO:0003723 ... Q9BYD2 37141370
    796786 8oir:BP (3.1) BS01 rna ? GO:0003723 ... Q7Z7H8 37141370
    796787 8oir:BQ (3.1) BS01 rna ? GO:0003723 ... Q9Y3B7 37141370
    796788 8oir:BR (3.1) BS01 rna ? GO:0003723 ... Q9BYD1 37141370
    796789 8oir:BS (3.1) BS01 rna ? GO:0003723 ... Q6P1L8 37141370
    796790 8oir:BT (3.1) BS01 rna ? GO:0003723 ... Q9P015 37141370
    796791 8oir:BU (3.1) BS01 rna ? GO:0003735 ... Q9NX20 37141370
    796792 8oir:BV (3.1) BS01 rna ? GO:0003735 ... Q9NRX2 37141370
    796793 8oir:BW (3.1) BS01 rna ? GO:0003723 ... Q9H0U6 37141370
    796794 8oir:BW (3.1) BS02 rna ? GO:0003723 ... Q9H0U6 37141370
    796795 8oir:BX (3.1) BS01 rna ? GO:0003735 ... P49406 37141370
    796796 8oir:BY (3.1) BS01 rna ? GO:0003723 ... Q9BYC9 37141370
    796797 8oir:BZ (3.1) BS01 rna ? GO:0003723 ... Q7Z2W9 37141370
    796798 8oir:Ba (3.1) BS01 rna ? GO:0003735 ... Q86TS9 37141370
    796799 8oir:Bb (3.1) BS01 rna ? GO:0005515 ... Q96EL3 37141370
    796800 8oir:Bc (3.1) BS01 rna ? GO:0003723 ... Q6P161 37141370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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