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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    795401 8k9p:A (1.5) BS01 CU ? GO:0042597 ... P04377 38232298
    795402 8k9q:A (2.84) BS01 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    795403 8k9q:A (2.84) BS02 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    795404 8k9q:A (2.84) BS03 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    795405 8k9q:A (2.84) BS04 D39 3.1.-.- GO:0005783 ... G0S652 38167496
    795406 8k9q:A (2.84) BS05 D39 3.1.-.- GO:0005783 ... G0S652 38167496
    795407 8k9r:A (2.68) BS01 peptide 3.1.-.- GO:0005783 ... G0S652 38167496
    795408 8k9r:A (2.68) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    795409 8k9r:A (2.68) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    795410 8k9r:A (2.68) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    795411 8k9r:A (2.68) BS05 L9H 3.1.-.- GO:0005783 ... G0S652 38167496
    795412 8k9r:A (2.68) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    795413 8k9r:A (2.68) BS07 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    795414 8k9t:A (2.66) BS01 peptide 3.1.-.- GO:0005783 ... G0S652 38167496
    795415 8k9t:A (2.66) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    795416 8k9t:A (2.66) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    795417 8k9t:A (2.66) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    795418 8k9t:A (2.66) BS05 LYI 3.1.-.- GO:0005783 ... G0S652 38167496
    795419 8k9t:A (2.66) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    795420 8k9t:A (2.66) BS07 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    795421 8k9t:A (2.66) BS08 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    795422 8k9y:A (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    795423 8k9y:B (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    795424 8ka3:A (3.0) BS01 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795425 8ka3:A (3.0) BS02 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795426 8ka3:A (3.0) BS03 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795427 8ka3:A (3.0) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    795428 8ka4:B (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    795429 8ka4:C (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    795430 8ka5:A (2.8) BS01 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795431 8ka5:A (2.8) BS02 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795432 8ka5:A (2.8) BS03 dna 3.1.11.2 GO:0003677 ... P45951 38503293
    795433 8ka5:A (2.8) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    795434 8ka8:A (2.96) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A1U7QTA1 38305152
    795435 8kae:R (3.18) BS01 YUX ? GO:0001782 ... Q8IVW8 38123825
    795436 8kag:B (3.88) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795437 8kag:B (3.88) BS02 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795438 8kah:B (3.36) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795439 8kah:B (3.36) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795440 8kah:B (3.36) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795441 8kah:B (3.36) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795442 8kah:F (3.36) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795443 8kah:F (3.36) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795444 8kah:F (3.36) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795445 8kah:F (3.36) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795446 8kai:B (3.49) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795447 8kai:B (3.49) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795448 8kai:B (3.49) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795449 8kai:B (3.49) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795450 8kai:F (3.49) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795451 8kai:F (3.49) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795452 8kai:F (3.49) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795453 8kai:F (3.49) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795454 8kaj:B (3.42) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795455 8kaj:B (3.42) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795456 8kaj:B (3.42) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795457 8kaj:B (3.42) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795458 8kaj:F (3.42) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795459 8kaj:F (3.42) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795460 8kaj:F (3.42) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795461 8kaj:F (3.42) BS04 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795462 8kak:B (3.6) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795463 8kak:B (3.6) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795464 8kak:B (3.6) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795465 8kak:F (3.6) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795466 8kak:F (3.6) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795467 8kak:F (3.6) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795468 8kal:B (3.16) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795469 8kal:B (3.16) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795470 8kal:B (3.16) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795471 8kal:G (3.16) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795472 8kal:G (3.16) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795473 8kal:G (3.16) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795474 8kam:B (3.91) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795475 8kam:B (3.91) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795476 8kam:B (3.91) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811761
    795477 8kb5:A (2.26133) BS01 dna ? GO:0000775 ... P84243 37757444
    795478 8kb5:A (2.26133) BS02 dna ? GO:0000775 ... P84243 37757444
    795479 8kb5:B (2.26133) BS01 dna ? GO:0000781 ... P62805 37757444
    795480 8kb5:B (2.26133) BS02 dna ? GO:0000781 ... P62805 37757444
    795481 8kb5:C (2.26133) BS01 dna ? GO:0000786 ... P04908 37757444
    795482 8kb5:C (2.26133) BS02 dna ? GO:0000786 ... P04908 37757444
    795483 8kb5:D (2.26133) BS01 dna ? GO:0000786 ... P06899 37757444
    795484 8kb5:D (2.26133) BS02 dna ? GO:0000786 ... P06899 37757444
    795485 8kb5:E (2.26133) BS01 dna ? GO:0000775 ... P84243 37757444
    795486 8kb5:E (2.26133) BS02 dna ? GO:0000775 ... P84243 37757444
    795487 8kb5:F (2.26133) BS01 dna ? GO:0000781 ... P62805 37757444
    795488 8kb5:F (2.26133) BS02 dna ? GO:0000781 ... P62805 37757444
    795489 8kb5:G (2.26133) BS01 dna ? GO:0000786 ... P04908 37757444
    795490 8kb5:G (2.26133) BS02 dna ? GO:0000786 ... P04908 37757444
    795491 8kb5:H (2.26133) BS01 dna ? GO:0000786 ... P06899 37757444
    795492 8kb5:H (2.26133) BS02 dna ? GO:0000786 ... P06899 37757444
    795493 8kc2:A (2.6) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A1U7QTA1 38305152
    795494 8kcm:A (2.5) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795495 8kcm:A (2.5) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795496 8kcm:A (2.5) BS03 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795497 8kcm:B (2.5) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795498 8kcm:B (2.5) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795499 8kcm:B (2.5) BS03 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    795500 8kcw:A (2.77) BS01 ZN ? N/A Q9NXL6 38811802
    795501 8kcw:A (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    795502 8kcw:A (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    795503 8kcw:C (2.77) BS01 ZN ? N/A Q9NXL6 38811802
    795504 8kcw:C (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    795505 8kcw:C (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    795506 8kcx:A (2.96) BS01 ZN ? N/A Q9NXL6 38811802
    795507 8kcx:C (2.96) BS01 ZN ? N/A Q9NXL6 38811802
    795508 8kcz:A (2.3) BS01 FAD 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    795509 8kcz:A (2.3) BS02 ANB 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    795510 8kd2:E (3.02) BS01 peptide ? GO:0000118 ... Q04779 37666978
    795511 8kd2:E (3.02) BS02 peptide ? GO:0000118 ... Q04779 37666978
    795512 8kd2:O (3.02) BS01 dna ? GO:0000786 ... P84233 37666978
    795513 8kd2:O (3.02) BS02 dna ? GO:0000786 ... P84233 37666978
    795514 8kd2:P (3.02) BS01 dna ? GO:0000786 ... P62799 37666978
    795515 8kd2:P (3.02) BS02 dna ? GO:0000786 ... P62799 37666978
    795516 8kd2:Q (3.02) BS01 dna ? GO:0000786 ... P06897 37666978
    795517 8kd2:Q (3.02) BS02 dna ? GO:0000786 ... P06897 37666978
    795518 8kd2:R (3.02) BS01 dna ? GO:0000786 ... P02281 37666978
    795519 8kd2:R (3.02) BS02 dna ? GO:0000786 ... P02281 37666978
    795520 8kd2:S (3.02) BS01 dna ? GO:0000786 ... P84233 37666978
    795521 8kd2:S (3.02) BS02 dna ? GO:0000786 ... P84233 37666978
    795522 8kd2:T (3.02) BS01 dna ? GO:0000786 ... P62799 37666978
    795523 8kd2:T (3.02) BS02 dna ? GO:0000786 ... P62799 37666978
    795524 8kd2:U (3.02) BS01 dna ? GO:0000786 ... P06897 37666978
    795525 8kd2:U (3.02) BS02 dna ? GO:0000786 ... P06897 37666978
    795526 8kd2:V (3.02) BS01 dna ? GO:0000786 ... P02281 37666978
    795527 8kd2:V (3.02) BS02 dna ? GO:0000786 ... P02281 37666978
    795528 8kd3:B (2.9) BS01 dna ? GO:0000086 ... P22579 37666978
    795529 8kd3:B (2.9) BS02 dna ? GO:0000086 ... P22579 37666978
    795530 8kd3:D (2.9) BS01 dna ? GO:0000122 ... Q12432 37666978
    795531 8kd3:F (2.9) BS01 dna ? GO:0000122 ... Q12432 37666978
    795532 8kd3:O (2.9) BS01 dna ? GO:0000786 ... A0A310TTQ1 37666978
    795533 8kd3:O (2.9) BS02 dna ? GO:0000786 ... A0A310TTQ1 37666978
    795534 8kd3:P (2.9) BS01 dna ? GO:0000786 ... P62799 37666978
    795535 8kd3:P (2.9) BS02 dna ? GO:0000786 ... P62799 37666978
    795536 8kd3:Q (2.9) BS01 dna ? GO:0000786 ... Q6AZJ8 37666978
    795537 8kd3:Q (2.9) BS02 dna ? GO:0000786 ... Q6AZJ8 37666978
    795538 8kd3:R (2.9) BS01 dna ? GO:0000786 ... P02281 37666978
    795539 8kd3:R (2.9) BS02 dna ? GO:0000786 ... P02281 37666978
    795540 8kd3:S (2.9) BS01 dna ? GO:0000786 ... A0A310TTQ1 37666978
    795541 8kd3:S (2.9) BS02 dna ? GO:0000786 ... A0A310TTQ1 37666978
    795542 8kd3:T (2.9) BS01 dna ? GO:0000786 ... P62799 37666978
    795543 8kd3:T (2.9) BS02 dna ? GO:0000786 ... P62799 37666978
    795544 8kd3:U (2.9) BS01 dna ? GO:0000786 ... Q6AZJ8 37666978
    795545 8kd3:U (2.9) BS02 dna ? GO:0000786 ... Q6AZJ8 37666978
    795546 8kd3:V (2.9) BS01 dna ? GO:0000786 ... P02281 37666978
    795547 8kd3:V (2.9) BS02 dna ? GO:0000786 ... P02281 37666978
    795548 8kd4:B (2.93) BS01 dna ? GO:0003714 ... P22579 37666978
    795549 8kd4:B (2.93) BS02 dna ? GO:0003714 ... P22579 37666978
    795550 8kd4:D (2.93) BS01 dna ? GO:0000122 ... Q12432 37666978
    795551 8kd4:E (2.93) BS01 dna ? GO:0000118 ... Q04779 37666978
    795552 8kd4:F (2.93) BS01 dna ? GO:0000122 ... Q12432 37666978
    795553 8kd4:O (2.93) BS01 dna ? GO:0000786 ... P84233 37666978
    795554 8kd4:O (2.93) BS02 dna ? GO:0000786 ... P84233 37666978
    795555 8kd4:P (2.93) BS01 dna ? GO:0000786 ... P62799 37666978
    795556 8kd4:P (2.93) BS02 dna ? GO:0000786 ... P62799 37666978
    795557 8kd4:Q (2.93) BS01 dna ? GO:0000786 ... P06897 37666978
    795558 8kd4:Q (2.93) BS02 dna ? GO:0000786 ... P06897 37666978
    795559 8kd4:R (2.93) BS01 dna ? GO:0000786 ... P02281 37666978
    795560 8kd4:R (2.93) BS02 dna ? GO:0000786 ... P02281 37666978
    795561 8kd4:S (2.93) BS01 dna ? GO:0000786 ... P84233 37666978
    795562 8kd4:S (2.93) BS02 dna ? GO:0000786 ... P84233 37666978
    795563 8kd4:T (2.93) BS01 dna ? GO:0000786 ... P62799 37666978
    795564 8kd4:T (2.93) BS02 dna ? GO:0000786 ... P62799 37666978
    795565 8kd4:U (2.93) BS01 dna ? GO:0000786 ... P06897 37666978
    795566 8kd4:U (2.93) BS02 dna ? GO:0000786 ... P06897 37666978
    795567 8kd4:V (2.93) BS01 dna ? GO:0000786 ... P02281 37666978
    795568 8kd4:V (2.93) BS02 dna ? GO:0000786 ... P02281 37666978
    795569 8kd5:B (2.9) BS01 dna ? GO:0000086 ... P22579 37666978
    795570 8kd5:D (2.9) BS01 dna ? GO:0000122 ... Q12432 37666978
    795571 8kd5:F (2.9) BS01 dna ? GO:0000122 ... Q12432 37666978
    795572 8kd5:O (2.9) BS01 dna ? GO:0000786 ... P84233 37666978
    795573 8kd5:O (2.9) BS02 dna ? GO:0000786 ... P84233 37666978
    795574 8kd5:P (2.9) BS01 dna ? GO:0000786 ... P62799 37666978
    795575 8kd5:P (2.9) BS02 dna ? GO:0000786 ... P62799 37666978
    795576 8kd5:Q (2.9) BS01 dna ? GO:0000786 ... P06897 37666978
    795577 8kd5:Q (2.9) BS02 dna ? GO:0000786 ... P06897 37666978
    795578 8kd5:R (2.9) BS01 dna ? GO:0000786 ... P02281 37666978
    795579 8kd5:R (2.9) BS02 dna ? GO:0000786 ... P02281 37666978
    795580 8kd5:S (2.9) BS01 dna ? GO:0000786 ... P84233 37666978
    795581 8kd5:S (2.9) BS02 dna ? GO:0000786 ... P84233 37666978
    795582 8kd5:T (2.9) BS01 dna ? GO:0000786 ... P62799 37666978
    795583 8kd5:T (2.9) BS02 dna ? GO:0000786 ... P62799 37666978
    795584 8kd5:U (2.9) BS01 dna ? GO:0000786 ... P06897 37666978
    795585 8kd5:U (2.9) BS02 dna ? GO:0000786 ... P06897 37666978
    795586 8kd5:V (2.9) BS01 dna ? GO:0000786 ... P02281 37666978
    795587 8kd5:V (2.9) BS02 dna ? GO:0000786 ... P02281 37666978
    795588 8kd6:B (3.07) BS01 dna ? GO:0003714 ... P22579 37666978
    795589 8kd6:D (3.07) BS01 dna ? GO:0000122 ... Q12432 37666978
    795590 8kd6:E (3.07) BS01 dna ? GO:0000118 ... Q04779 37666978
    795591 8kd6:E (3.07) BS02 dna ? GO:0000118 ... Q04779 37666978
    795592 8kd6:F (3.07) BS01 dna ? GO:0000122 ... Q12432 37666978
    795593 8kd6:O (3.07) BS01 dna ? GO:0000786 ... P84233 37666978
    795594 8kd6:O (3.07) BS02 dna ? GO:0000786 ... P84233 37666978
    795595 8kd6:P (3.07) BS01 dna ? GO:0000786 ... P62799 37666978
    795596 8kd6:P (3.07) BS02 dna ? GO:0000786 ... P62799 37666978
    795597 8kd6:Q (3.07) BS01 dna ? GO:0000786 ... P06897 37666978
    795598 8kd6:Q (3.07) BS02 dna ? GO:0000786 ... P06897 37666978
    795599 8kd6:R (3.07) BS01 dna ? GO:0000786 ... P02281 37666978
    795600 8kd6:R (3.07) BS02 dna ? GO:0000786 ... P02281 37666978
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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