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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    795201 8k5y:B (1.52) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 37952596
    795202 8k5y:B (1.52) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 37952596
    795203 8k5y:B (1.52) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    795204 8k5y:B (1.52) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    795205 8k5y:B (1.52) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    795206 8k5y:B (1.52) BS06 VP6 3.4.24.35 GO:0004222 ... P14780 37952596
    795207 8k65:A (2.0) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795208 8k65:A (2.0) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795209 8k65:A (2.0) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795210 8k65:B (2.0) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 38064560
    795211 8k66:A (2.53) BS01 Y01 ? GO:0005886 ... Q0D9S3 38570642
    795212 8k66:A (2.53) BS02 Y01 ? GO:0005886 ... Q0D9S3 38570642
    795213 8k66:A (2.53) BS03 T7X ? GO:0005886 ... Q0D9S3 38570642
    795214 8k66:A (2.53) BS04 CLR ? GO:0005886 ... Q0D9S3 38570642
    795215 8k66:B (2.53) BS01 Y01 ? GO:0005886 ... Q0D9S3 38570642
    795216 8k66:B (2.53) BS02 Y01 ? GO:0005886 ... Q0D9S3 38570642
    795217 8k66:B (2.53) BS03 T7X ? GO:0005886 ... Q0D9S3 38570642
    795218 8k66:B (2.53) BS04 CLR ? GO:0005886 ... Q0D9S3 38570642
    795219 8k69:A (2.33) BS01 Y01 ? GO:0005886 ... Q93XI5 38570642
    795220 8k69:A (2.33) BS02 Y01 ? GO:0005886 ... Q93XI5 38570642
    795221 8k69:A (2.33) BS03 T7X ? GO:0005886 ... Q93XI5 38570642
    795222 8k69:A (2.33) BS04 CLR ? GO:0005886 ... Q93XI5 38570642
    795223 8k69:B (2.33) BS01 Y01 ? GO:0005886 ... Q93XI5 38570642
    795224 8k69:B (2.33) BS02 Y01 ? GO:0005886 ... Q93XI5 38570642
    795225 8k69:B (2.33) BS03 T7X ? GO:0005886 ... Q93XI5 38570642
    795226 8k69:B (2.33) BS04 CLR ? GO:0005886 ... Q93XI5 38570642
    795227 8k6d:A (1.65) BS01 J7R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38594245
    795228 8k6h:A (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795229 8k6h:B (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795230 8k6h:C (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795231 8k6h:D (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795232 8k6h:E (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795233 8k6h:F (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795234 8k6h:G (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795235 8k6h:H (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795236 8k6h:I (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795237 8k6h:J (1.5) BS01 0NM 4.2.1.104 GO:0003677 ... P00816 37971797
    795238 8k6j:C (2.77) BS01 HEC ? N/A M1V1V5 N/A
    795239 8k6j:C (2.77) BS02 HEC ? N/A M1V1V5 N/A
    795240 8k6j:C (2.77) BS03 HEC ? N/A M1V1V5 N/A
    795241 8k6j:C (2.77) BS04 U10 ? N/A M1V1V5 N/A
    795242 8k6k:C (2.4) BS01 HEC ? N/A M1V1V5 N/A
    795243 8k6k:C (2.4) BS02 HEC ? N/A M1V1V5 N/A
    795244 8k6k:C (2.4) BS03 HEC ? N/A M1V1V5 N/A
    795245 8k6k:C (2.4) BS04 U10 ? N/A M1V1V5 N/A
    795246 8k6l:A (2.92) BS01 IOQ ? GO:0005886 ... Q9Y6L6 37674011
    795247 8k6s:A (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795248 8k6s:B (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795249 8k6s:F (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795250 8k6s:G (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795251 8k6s:I (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795252 8k6x:A (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795253 8k6x:B (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795254 8k6x:C (1.8) BS01 VQO 4.2.1.104 GO:0003677 ... P00816 37971797
    795255 8k6x:D (1.8) BS01 VQO 4.2.1.104 GO:0003677 ... P00816 37971797
    795256 8k6x:E (1.8) BS01 VQO 4.2.1.104 GO:0003677 ... P00816 37971797
    795257 8k6x:F (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795258 8k6x:G (1.8) BS01 VQO 4.2.1.104 GO:0003677 ... P00816 37971797
    795259 8k6x:H (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795260 8k6x:I (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    795261 8k6x:J (1.8) BS01 VQO 4.2.1.104 GO:0003677 ... P00816 37971797
    795262 8k6y:A (2.0) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795263 8k6y:A (2.0) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795264 8k6y:A (2.0) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    795265 8k6y:B (2.0) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 38064560
    795266 8k71:A (2.23) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795267 8k71:A (2.23) BS02 VIZ 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795268 8k72:A (2.45) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795269 8k72:A (2.45) BS02 VJF 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795270 8k73:A (2.02) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795271 8k73:A (2.02) BS02 VK6 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 37969593
    795272 8k77:A (3.11) BS01 VLX ? GO:0005783 ... Q7L0J3 38637505
    795273 8k7a:A (4.2) BS01 ATP 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795274 8k7a:A (4.2) BS02 MG 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795275 8k7a:A (4.2) BS03 ATP 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795276 8k7a:B (4.2) BS01 ATP 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795277 8k7a:B (4.2) BS02 ATP 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795278 8k7a:B (4.2) BS03 MG 3.4.22.-
    7.4.2.-    		 GO:0005524 ... P59653 37935699
    795279 8k7b:A (3.9) BS01 AOV 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795280 8k7b:A (3.9) BS02 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795281 8k7b:A (3.9) BS03 AOV 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795282 8k7b:B (3.9) BS01 AOV 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795283 8k7b:B (3.9) BS02 AOV 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795284 8k7b:B (3.9) BS03 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795285 8k7c:A (3.9) BS01 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795286 8k7c:A (3.9) BS02 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795287 8k7c:A (3.9) BS03 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795288 8k7c:B (3.9) BS01 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795289 8k7c:B (3.9) BS02 ADP 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795290 8k7c:B (3.9) BS03 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    795291 8k7d:A (2.61) BS01 VLN 3.2.1.22 GO:0003824 ... P06280 38559739
    795292 8k7d:B (2.61) BS01 VLN 3.2.1.22 GO:0003824 ... P06280 38559739
    795293 8k7e:A (2.2) BS01 VLN 3.2.1.22 GO:0003824 ... P06280 38559739
    795294 8k7e:B (2.2) BS01 VLN 3.2.1.22 GO:0003824 ... P06280 38559739
    795295 8k7f:A (1.98) BS01 VMF 3.2.1.22 GO:0003824 ... P06280 38559739
    795296 8k7f:B (1.98) BS01 VMF 3.2.1.22 GO:0003824 ... P06280 38559739
    795297 8k7g:A (2.32) BS01 VMF 3.2.1.22 GO:0003824 ... P06280 38559739
    795298 8k7g:B (2.32) BS01 VMF 3.2.1.22 GO:0003824 ... P06280 38559739
    795299 8k7h:A (2.28) BS01 VMO 3.2.1.22 GO:0003824 ... P06280 38559739
    795300 8k7h:B (2.28) BS01 VMO 3.2.1.22 GO:0003824 ... P06280 38559739
    795301 8k7i:A (2.12) BS01 VN0 3.2.1.22 GO:0003824 ... P06280 38559739
    795302 8k7i:B (2.12) BS01 VN0 3.2.1.22 GO:0003824 ... P06280 38559739
    795303 8k7j:A (2.01) BS01 VNB 3.2.1.22 GO:0003824 ... P06280 38559739
    795304 8k7j:B (2.01) BS01 VNB 3.2.1.22 GO:0003824 ... P06280 38559739
    795305 8k7k:A (2.0) BS01 VNQ 3.2.1.22 GO:0003824 ... P06280 38559739
    795306 8k7k:B (2.0) BS01 VNQ 3.2.1.22 GO:0003824 ... P06280 38559739
    795307 8k7l:A (2.0) BS01 VO0 3.2.1.22 GO:0003824 ... P06280 38559739
    795308 8k7l:B (2.0) BS01 VO0 3.2.1.22 GO:0003824 ... P06280 38559739
    795309 8k7p:A (2.19) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    795310 8k7p:A (2.19) BS02 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    795311 8k7p:A (2.19) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795312 8k7p:B (2.19) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    795313 8k7p:B (2.19) BS02 6NA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795314 8k7p:B (2.19) BS03 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    795315 8k7p:B (2.19) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795316 8k7q:A (2.02) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    795317 8k7q:A (2.02) BS02 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    795318 8k7q:A (2.02) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795319 8k7q:B (2.02) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    795320 8k7q:B (2.02) BS02 6NA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795321 8k7q:B (2.02) BS03 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    795322 8k7q:B (2.02) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    795323 8k7x:A (1.75) BS01 ZN 3.2.1.185 N/A A0AA45ZPU1 38324037
    795324 8k7y:A (1.7) BS01 ZN 3.2.1.185 N/A A0AA45ZPU1 38324037
    795325 8k7y:E (1.7) BS01 ZN 3.2.1.185 N/A A0AA45ZPU1 38324037
    795326 8k86:A (2.06) BS01 dna ? GO:0003677 ... Q16649 38382670
    795327 8k86:A (2.06) BS02 dna ? GO:0003677 ... Q16649 38382670
    795328 8k86:B (2.06) BS01 dna ? GO:0003677 ... Q16649 38382670
    795329 8k86:B (2.06) BS02 dna ? GO:0003677 ... Q16649 38382670
    795330 8k8a:A (2.07) BS01 dna ? GO:0003677 ... Q16649 38382670
    795331 8k8a:A (2.07) BS02 dna ? GO:0003677 ... Q16649 38382670
    795332 8k8a:B (2.07) BS01 dna ? GO:0003677 ... Q16649 38382670
    795333 8k8a:B (2.07) BS02 dna ? GO:0003677 ... Q16649 38382670
    795334 8k8c:A (2.06) BS01 dna ? GO:0003700 ... P49715 38382670
    795335 8k8c:A (2.06) BS02 dna ? GO:0003700 ... P49715 38382670
    795336 8k8c:B (2.06) BS01 dna ? GO:0003700 ... P49715 38382670
    795337 8k8c:B (2.06) BS02 dna ? GO:0003700 ... P49715 38382670
    795338 8k8d:A (2.2) BS01 dna ? GO:0003700 ... P17676 38382670
    795339 8k8d:A (2.2) BS02 dna ? GO:0003700 ... P17676 38382670
    795340 8k8d:B (2.2) BS01 dna ? GO:0003700 ... P17676 38382670
    795341 8k8d:B (2.2) BS02 dna ? GO:0003700 ... P17676 38382670
    795342 8k8e:B (2.6) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38349793
    795343 8k8e:C (2.6) BS01 CLR ? GO:0000139 ... Q96BI3 38349793
    795344 8k8j:R (2.88) BS01 J3O ? GO:0004930 ... P0ABE7
    P21554    		 38298116
    795345 8k8l:A (1.77) BS01 MOO ? GO:0015689 ... A0A0H3GU89 37751633
    795346 8k9e:A (3.33) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    795347 8k9e:A (3.33) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    795348 8k9e:A (3.33) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    795349 8k9e:A (3.33) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    795350 8k9e:A (3.33) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    795351 8k9e:A (3.33) BS06 EL6 ? GO:0016020 ... A9WEV2 38299372
    795352 8k9e:B (3.33) BS01 HEC ? N/A A9WEV3 38299372
    795353 8k9e:B (3.33) BS02 HEC ? N/A A9WEV3 38299372
    795354 8k9e:B (3.33) BS03 SF4 ? N/A A9WEV3 38299372
    795355 8k9e:B (3.33) BS04 SF4 ? N/A A9WEV3 38299372
    795356 8k9e:B (3.33) BS05 SF4 ? N/A A9WEV3 38299372
    795357 8k9e:B (3.33) BS06 F3S ? N/A A9WEV3 38299372
    795358 8k9e:C (3.33) BS01 JLQ ? GO:0005886 ... A9WEV4 38299372
    795359 8k9e:C (3.33) BS02 JM9 ? GO:0005886 ... A9WEV4 38299372
    795360 8k9e:D (3.33) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    795361 8k9e:E (3.33) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    795362 8k9e:E (3.33) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    795363 8k9e:F (3.33) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    795364 8k9e:F (3.33) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    795365 8k9e:F (3.33) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    795366 8k9f:A (2.9) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    795367 8k9f:A (2.9) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    795368 8k9f:A (2.9) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    795369 8k9f:A (2.9) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    795370 8k9f:A (2.9) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    795371 8k9f:B (2.9) BS01 HEC ? N/A A9WEV3 38299372
    795372 8k9f:B (2.9) BS02 HEC ? N/A A9WEV3 38299372
    795373 8k9f:B (2.9) BS03 SF4 ? N/A A9WEV3 38299372
    795374 8k9f:B (2.9) BS04 SF4 ? N/A A9WEV3 38299372
    795375 8k9f:B (2.9) BS05 SF4 ? N/A A9WEV3 38299372
    795376 8k9f:B (2.9) BS06 F3S ? N/A A9WEV3 38299372
    795377 8k9f:B (2.9) BS07 MG ? N/A A9WEV3 38299372
    795378 8k9f:C (2.9) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    795379 8k9f:C (2.9) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    795380 8k9f:C (2.9) BS03 JL3 ? GO:0005886 ... A9WEV4 38299372
    795381 8k9f:C (2.9) BS04 JM9 ? GO:0005886 ... A9WEV4 38299372
    795382 8k9f:D (2.9) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    795383 8k9f:E (2.9) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    795384 8k9f:E (2.9) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    795385 8k9f:E (2.9) BS03 HEC ? GO:0009055 ... A9WEV6 38299372
    795386 8k9f:F (2.9) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    795387 8k9f:F (2.9) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    795388 8k9f:F (2.9) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    795389 8k9g:A (3.49) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    795390 8k9g:A (3.49) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    795391 8k9g:B (3.49) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    795392 8k9g:B (3.49) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    795393 8k9g:E (3.49) BS01 dna ? GO:0003676 ... A0A1I7NFD7 37783228
    795394 8k9g:E (3.49) BS02 rna ? GO:0003676 ... A0A1I7NFD7 37783228
    795395 8k9g:F (3.49) BS01 dna ? GO:0007165 ... A0A1I7NFG5 37783228
    795396 8k9g:F (3.49) BS02 rna ? GO:0007165 ... A0A1I7NFG5 37783228
    795397 8k9k:R (2.98) BS01 peptide ? GO:0042597 ... P0ABE7
    P35372    		 38740791
    795398 8k9l:R (3.05) BS01 peptide ? GO:0042597 ... P0ABE7
    P35372    		 38740791
    795399 8k9l:R (3.05) BS02 VV9 ? GO:0042597 ... P0ABE7
    P35372    		 38740791
    795400 8k9n:A (0.86) BS01 CU ? GO:0005507 ... P04377 38232298
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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