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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    788801 8iyj:TK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788802 8iyj:TL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788803 8iyj:TM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788804 8iyj:TN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788805 8iyj:UA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788806 8iyj:UB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788807 8iyj:UC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788808 8iyj:UD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788809 8iyj:UE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788810 8iyj:UF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788811 8iyj:UG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788812 8iyj:UH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788813 8iyj:UI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788814 8iyj:UJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788815 8iyj:UK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788816 8iyj:UL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788817 8iyj:UM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788818 8iyj:UN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788819 8iyj:UO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788820 8iyj:VA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788821 8iyj:VB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788822 8iyj:VC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788823 8iyj:VD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788824 8iyj:VE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788825 8iyj:VF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788826 8iyj:VG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788827 8iyj:VH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788828 8iyj:VI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788829 8iyj:VJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788830 8iyj:VK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788831 8iyj:VL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788832 8iyj:VM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788833 8iyj:VN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788834 8iyj:VO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788835 8iyj:WA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788836 8iyj:WB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788837 8iyj:WC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788838 8iyj:WD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788839 8iyj:WE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788840 8iyj:WF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788841 8iyj:WG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788842 8iyj:WH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788843 8iyj:WI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788844 8iyj:WJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788845 8iyj:WK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788846 8iyj:WK (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    788847 8iyj:WL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788848 8iyj:WM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788849 8iyj:WN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788850 8iyj:WO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    788851 8iyj:WP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    788852 8iyk:L (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788853 8iyk:N (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788854 8iyk:f (2.95) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788855 8iyl:G (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788856 8iyl:L (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788857 8iyl:d (3.0) BS01 SF4 ? GO:0030430 ... P03738 37918400
    788858 8iyn:A (2.081) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 N/A
    788859 8iyo:A (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    788860 8iyo:B (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    788861 8iyo:C (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    788862 8iyo:D (2.4) BS01 ACO ? GO:0008080 ... O25589 N/A
    788863 8iyp:A (1.651) BS01 PLS 2.3.1.50 GO:0004758 ... A7BFV6 N/A
    788864 8iys:A (2.95) BS01 GDP ? GO:0001664 ... P50148 37286793
    788865 8iys:R (2.95) BS01 YN9 ? GO:0001818 ... Q5NUL3 37286793
    788866 8iyt:A (1.7) BS01 S5R 2.3.1.50 GO:0004758 ... A7BFV6 N/A
    788867 8iyw:R (3.45) BS01 OKL ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    788868 8iyx:C (3.34) BS01 S6R ? GO:0004930 ... Q9UPC5 37733739
    788869 8iz4:R (2.93) BS01 TJR ? GO:0004930 ... Q9UPC5 N/A
    788870 8iz4:R (2.93) BS02 SER ? GO:0004930 ... Q9UPC5 N/A
    788871 8iz4:R (2.93) BS03 CLR ? GO:0004930 ... Q9UPC5 N/A
    788872 8iz7:A (3.8) BS01 SUZ 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    788873 8iz9:A (2.95) BS01 XPG 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    788874 8iza:A (3.48) BS01 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    788875 8iza:A (3.48) BS02 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0001409 ... O15439 N/A
    788876 8izb:R (3.06) BS01 UBL ? GO:0004930 ... Q9BXC1 38048360
    788877 8izb:R (3.06) BS02 SER ? GO:0004930 ... Q9BXC1 38048360
    788878 8izb:R (3.06) BS03 CLR ? GO:0004930 ... Q9BXC1 38048360
    788879 8izb:R (3.06) BS04 CLR ? GO:0004930 ... Q9BXC1 38048360
    788880 8izc:A (1.45) BS01 S93 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 N/A
    788881 8izc:B (1.45) BS01 S93 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 N/A
    788882 8izd:A (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    788883 8izd:C (3.09) BS01 9NY 2.3.1.297 GO:0005515 ... P28496 37953642
    788884 8ize:A (1.4) BS01 S9R ? N/A O00481 37674084
    788885 8izg:A (1.6) BS01 SE6 ? N/A O00481 37674084
    788886 8izj:A (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    788887 8izj:B (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    788888 8izl:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q9J4L0 38760379
    788889 8izl:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q9J4L0 38760379
    788890 8izm:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q9J4L0 N/A
    788891 8izm:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q9J4L0 N/A
    788892 8izt:A (1.74) BS01 ZN ? N/A A0A7H0DNA4 38159644
    788893 8izy:A (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    788894 8izy:A (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    788895 8izy:A (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    788896 8izy:B (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    788897 8izy:B (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    788898 8izy:B (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    788899 8izy:C (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    788900 8izy:C (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    788901 8izy:C (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    788902 8izy:D (2.5) BS01 9MF ? GO:0005216 ... O43526 37857637
    788903 8izy:D (2.5) BS02 9MF ? GO:0005216 ... O43526 37857637
    788904 8izy:D (2.5) BS03 9MF ? GO:0005216 ... O43526 37857637
    788905 8j00:A (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    788906 8j00:A (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    788907 8j00:A (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    788908 8j00:B (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    788909 8j00:B (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    788910 8j00:B (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    788911 8j00:C (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    788912 8j00:C (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    788913 8j00:C (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    788914 8j00:D (3.0) BS01 P0T ? GO:0005216 ... O43526 37857637
    788915 8j00:D (3.0) BS02 P0T ? GO:0005216 ... O43526 37857637
    788916 8j00:D (3.0) BS03 P0T ? GO:0005216 ... O43526 37857637
    788917 8j01:A (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    788918 8j01:A (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    788919 8j01:A (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    788920 8j01:A (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    788921 8j01:B (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    788922 8j01:B (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    788923 8j01:B (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    788924 8j01:D (3.1) BS01 PIO ? GO:0005216 ... O43526 37857637
    788925 8j01:D (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    788926 8j01:D (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    788927 8j01:G (3.1) BS01 P0T ? GO:0005216 ... O43526 37857637
    788928 8j01:G (3.1) BS02 PIO ? GO:0005216 ... O43526 37857637
    788929 8j01:G (3.1) BS03 P0T ? GO:0005216 ... O43526 37857637
    788930 8j01:G (3.1) BS04 PIO ? GO:0005216 ... O43526 37857637
    788931 8j02:A (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    788932 8j02:A (3.5) BS02 P0T ? GO:0005216 ... O43526 37857637
    788933 8j02:A (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    788934 8j02:B (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    788935 8j02:B (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    788936 8j02:B (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    788937 8j02:D (3.5) BS01 PIO ? GO:0005216 ... O43526 37857637
    788938 8j02:D (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    788939 8j02:D (3.5) BS03 P0T ? GO:0005216 ... O43526 37857637
    788940 8j02:G (3.5) BS01 P0T ? GO:0005216 ... O43526 37857637
    788941 8j02:G (3.5) BS02 PIO ? GO:0005216 ... O43526 37857637
    788942 8j02:G (3.5) BS03 PIO ? GO:0005216 ... O43526 37857637
    788943 8j03:A (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    788944 8j03:A (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    788945 8j03:D (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    788946 8j03:D (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    788947 8j03:G (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    788948 8j03:G (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    788949 8j03:I (2.7) BS01 P0T ? GO:0005216 ... O43526 37857637
    788950 8j03:I (2.7) BS02 P0T ? GO:0005216 ... O43526 37857637
    788951 8j04:A (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    788952 8j04:A (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    788953 8j04:A (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    788954 8j04:B (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    788955 8j04:B (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    788956 8j04:B (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    788957 8j04:D (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    788958 8j04:D (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    788959 8j04:D (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    788960 8j04:G (2.7) BS01 9MF ? GO:0005216 ... O43526 37857637
    788961 8j04:G (2.7) BS02 9MF ? GO:0005216 ... O43526 37857637
    788962 8j04:G (2.7) BS03 9MF ? GO:0005216 ... O43526 37857637
    788963 8j07:8P (4.1) BS01 peptide ? GO:0005634 ... Q9UIF3 37258679
    788964 8j07:AB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788965 8j07:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788966 8j07:AD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788967 8j07:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788968 8j07:AF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788969 8j07:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788970 8j07:AH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788971 8j07:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788972 8j07:AJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788973 8j07:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788974 8j07:AK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    788975 8j07:AL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788976 8j07:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788977 8j07:AN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788978 8j07:AO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788979 8j07:AO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    788980 8j07:AP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788981 8j07:AQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788982 8j07:AR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788983 8j07:AS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788984 8j07:AT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788985 8j07:AU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788986 8j07:AV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788987 8j07:AW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788988 8j07:AX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788989 8j07:AY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788990 8j07:AZ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788991 8j07:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788992 8j07:BB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788993 8j07:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788994 8j07:BD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788995 8j07:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788996 8j07:BF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788997 8j07:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    788998 8j07:BH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    788999 8j07:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    789000 8j07:BJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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