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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    787601 8iun:1 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787602 8iun:1 (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787603 8iun:1 (2.85) BS04 U4Z ? GO:0005886 ... Q83XD1 37468106
    787604 8iun:2 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787605 8iun:2 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787606 8iun:3 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787607 8iun:3 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787608 8iun:4 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787609 8iun:4 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787610 8iun:5 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787611 8iun:5 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787612 8iun:6 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787613 8iun:6 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787614 8iun:6 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787615 8iun:6 (2.85) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787616 8iun:7 (2.85) BS01 U4Z ? GO:0005886 ... Q83XD1 37468106
    787617 8iun:7 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787618 8iun:7 (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787619 8iun:7 (2.85) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    787620 8iun:8 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787621 8iun:8 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787622 8iun:8 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787623 8iun:9 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787624 8iun:9 (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787625 8iun:A (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787626 8iun:A (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787627 8iun:A (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787628 8iun:B (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787629 8iun:B (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787630 8iun:B (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787631 8iun:C (2.85) BS01 HEC ? GO:0005506 ... A7NQE7 37468106
    787632 8iun:C (2.85) BS02 HEC ? GO:0005506 ... A7NQE7 37468106
    787633 8iun:C (2.85) BS03 HEC ? GO:0005506 ... A7NQE7 37468106
    787634 8iun:C (2.85) BS04 HEC ? GO:0005506 ... A7NQE7 37468106
    787635 8iun:C (2.85) BS05 CA ? GO:0005506 ... A7NQE7 37468106
    787636 8iun:D (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787637 8iun:D (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787638 8iun:D (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787639 8iun:E (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787640 8iun:E (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787641 8iun:E (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787642 8iun:F (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787643 8iun:F (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787644 8iun:F (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787645 8iun:G (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787646 8iun:G (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787647 8iun:H (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787648 8iun:H (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787649 8iun:I (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787650 8iun:I (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787651 8iun:I (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787652 8iun:J (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787653 8iun:J (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787654 8iun:J (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787655 8iun:K (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787656 8iun:K (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787657 8iun:K (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787658 8iun:L (2.85) BS01 BPH ? GO:0009772 ... A7NQE8 37468106
    787659 8iun:L (2.85) BS02 MN ? GO:0009772 ... A7NQE8 37468106
    787660 8iun:L (2.85) BS03 MQE ? GO:0009772 ... A7NQE8 37468106
    787661 8iun:L (2.85) BS04 BPH ? GO:0009772 ... A7NQE8 37468106
    787662 8iun:L (2.85) BS05 BCL ? GO:0009772 ... A7NQE8 37468106
    787663 8iun:L (2.85) BS06 BCL ? GO:0009772 ... A7NQE8 37468106
    787664 8iun:L (2.85) BS07 BPH ? GO:0009772 ... A7NQE8 37468106
    787665 8iun:L (2.85) BS08 MQE ? GO:0009772 ... A7NQE8 37468106
    787666 8iun:M (2.85) BS01 BCL ? GO:0009772 ... A7NQE8 37468106
    787667 8iun:M (2.85) BS02 BPH ? GO:0009772 ... A7NQE8 37468106
    787668 8iun:M (2.85) BS03 MN ? GO:0009772 ... A7NQE8 37468106
    787669 8iun:M (2.85) BS04 MQE ? GO:0009772 ... A7NQE8 37468106
    787670 8iun:M (2.85) BS05 BPH ? GO:0009772 ... A7NQE8 37468106
    787671 8iun:M (2.85) BS06 BCL ? GO:0009772 ... A7NQE8 37468106
    787672 8iun:N (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787673 8iun:N (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787674 8iun:O (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787675 8iun:O (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787676 8iun:O (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787677 8iun:P (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787678 8iun:P (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787679 8iun:Q (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787680 8iun:Q (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787681 8iun:Q (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787682 8iun:R (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787683 8iun:R (2.85) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787684 8iun:R (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787685 8iun:S (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787686 8iun:S (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787687 8iun:T (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787688 8iun:T (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787689 8iun:T (2.85) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787690 8iun:U (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787691 8iun:U (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787692 8iun:U (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787693 8iun:V (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787694 8iun:V (2.85) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787695 8iun:W (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787696 8iun:W (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787697 8iun:W (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787698 8iuo:A (3.96) BS01 rna ? GO:0003723 ... A0A2H4WKL8 37607909
    787699 8iuo:B (3.96) BS01 rna ? GO:0003723 ... A0A2H4WKL8 37607909
    787700 8iuo:C (3.96) BS01 rna ? GO:0003723 ... A0A2H4WKL8 37607909
    787701 8iuo:D (3.96) BS01 rna ? GO:0003723 ... A0A2H4WKL8 37607909
    787702 8iuo:E (3.96) BS01 rna ? GO:0003723 ... A0A2H4WKL8 37607909
    787703 8ius:A (2.14) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787704 8ius:A (2.14) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787705 8ius:B (2.14) BS01 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787706 8ius:B (2.14) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787707 8iut:A () BS01 MN 3.5.3.25 N/A N/A N/A
    787708 8iut:A () BS02 MN 3.5.3.25 N/A N/A N/A
    787709 8iut:B () BS01 CU 3.5.3.25 N/A N/A N/A
    787710 8iut:B () BS02 CU1 3.5.3.25 N/A N/A N/A
    787711 8iut:B () BS03 CU1 3.5.3.25 N/A N/A N/A
    787712 8iuu:A (1.26) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787713 8iuu:A (1.26) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787714 8iuu:B (1.26) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787715 8iuu:B (1.26) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787716 8iuv:A (1.75) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787717 8iuv:A (1.75) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787718 8iuv:B (1.75) BS01 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787719 8iuv:B (1.75) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787720 8iuw:A (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787721 8iuw:A (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787722 8iuw:B (1.5) BS01 CU 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787723 8iuw:B (1.5) BS02 CU1 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787724 8iuw:B (1.5) BS03 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    787725 8iv3:D (1.9) BS01 DJU ? GO:0003723 ... P0DTC9 38234090
    787726 8ive:A (1.44) BS01 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787727 8ive:A (1.44) BS02 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787728 8ive:B (1.44) BS01 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787729 8ivf:A (2.6) BS01 HC3 ? GO:0005504 ... O15540 38429999
    787730 8ivf:B (2.6) BS01 HC3 ? GO:0005504 ... O15540 38429999
    787731 8ivg:A (1.8) BS01 SGO ? N/A Q14145 37197451
    787732 8ivh:A (1.45) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 N/A
    787733 8ivh:B (1.45) BS01 R4O 3.1.1.- GO:0016787 ... G9I933 N/A
    787734 8ivl:A (2.7) BS01 CLR ? GO:0005504 ... O15540 38429999
    787735 8ivm:A (1.32) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787736 8ivm:A (1.32) BS02 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787737 8ivm:B (1.32) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787738 8ivm:B (1.32) BS02 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787739 8ivn:A (1.5) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787740 8ivn:A (1.5) BS02 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787741 8ivn:B (1.5) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787742 8ivn:B (1.5) BS02 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787743 8ivn:B (1.5) BS03 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    787744 8ivp:A (1.93) BS01 FUD 2.6.1.- GO:0003824 ... A1TDP1 N/A
    787745 8ivp:B (1.93) BS01 FUD 2.6.1.- GO:0003824 ... A1TDP1 N/A
    787746 8ivp:C (1.93) BS01 FUD 2.6.1.- GO:0003824 ... A1TDP1 N/A
    787747 8ivp:C (1.93) BS02 FUD 2.6.1.- GO:0003824 ... A1TDP1 N/A
    787748 8ivp:D (1.93) BS01 FUD 2.6.1.- GO:0003824 ... A1TDP1 N/A
    787749 8ivr:A (1.5) BS01 SIU ? N/A Q14145 37197451
    787750 8ivs:A (1.52) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 37468532
    787751 8ivs:A (1.52) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 37468532
    787752 8ivs:B (1.52) BS01 RXF 3.1.1.- GO:0016787 ... G9I933 37468532
    787753 8ivs:B (1.52) BS02 RXF 3.1.1.- GO:0016787 ... G9I933 37468532
    787754 8ivt:A (1.42) BS01 1TB 3.1.1.- GO:0016787 ... G9I933 37468532
    787755 8ivt:B (1.42) BS01 1TB 3.1.1.- GO:0016787 ... G9I933 37468532
    787756 8ivu:A (2.09001) BS01 SJ6 2.4.2.12 GO:0005125 ... P43490 37771778
    787757 8ivu:B (2.09001) BS01 SJ6 2.4.2.12 GO:0005125 ... P43490 37771778
    787758 8ivu:C (2.09001) BS01 SJ6 2.4.2.12 GO:0005125 ... P43490 37771778
    787759 8ivu:D (2.09001) BS01 SJ6 2.4.2.12 GO:0005125 ... P43490 37771778
    787760 8ivy:A (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... P26208 37558019
    787761 8ivy:B (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... P26208 37558019
    787762 8ivz:A (2.8) BS01 peptide ? N/A P26039 37874676
    787763 8ivz:B (2.8) BS01 peptide ? N/A P26039 37874676
    787764 8iw3:A (1.56) BS01 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787765 8iw3:A (1.56) BS02 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787766 8iw3:B (1.56) BS01 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787767 8iw3:B (1.56) BS02 CIE 3.1.1.- GO:0016787 ... G9I933 37468532
    787768 8iw4:R (3.49) BS01 SPD ? GO:0001594 ... Q5QD04 37225986
    787769 8iw5:B (1.7) BS01 CA ? N/A Q8C8U0 37874676
    787770 8iw6:A (1.44) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 37468532
    787771 8iw6:A (1.44) BS02 1SM 3.1.1.- GO:0016787 ... G9I933 37468532
    787772 8iw6:B (1.44) BS01 1SM 3.1.1.- GO:0016787 ... G9I933 37468532
    787773 8iw7:R (2.97) BS01 PEA ? GO:0001594 ... Q5QD04 37225986
    787774 8iwe:R (3.4) BS01 SPD ? GO:0001594 ... Q5QD04 37225986
    787775 8iwf:A (2.86) BS01 RY3 3.2.1.40 GO:0005975 ... R9W5L0 N/A
    787776 8iwh:0 (2.68) BS01 ET4 ? GO:0009765 ... B5YLU3 37878698
    787777 8iwh:0 (2.68) BS02 A86 ? GO:0009765 ... B5YLU3 37878698
    787778 8iwh:0 (2.68) BS03 CLA ? GO:0009765 ... B5YLU3 37878698
    787779 8iwh:0 (2.68) BS04 CLA ? GO:0009765 ... B5YLU3 37878698
    787780 8iwh:0 (2.68) BS05 KC2 ? GO:0009765 ... B5YLU3 37878698
    787781 8iwh:0 (2.68) BS06 CLA ? GO:0009765 ... B5YLU3 37878698
    787782 8iwh:0 (2.68) BS07 CLA ? GO:0009765 ... B5YLU3 37878698
    787783 8iwh:0 (2.68) BS08 CLA ? GO:0009765 ... B5YLU3 37878698
    787784 8iwh:0 (2.68) BS09 CLA ? GO:0009765 ... B5YLU3 37878698
    787785 8iwh:0 (2.68) BS10 CLA ? GO:0009765 ... B5YLU3 37878698
    787786 8iwh:0 (2.68) BS11 CLA ? GO:0009765 ... B5YLU3 37878698
    787787 8iwh:1 (2.68) BS01 CLA ? GO:0009765 ... B8BX93 37878698
    787788 8iwh:1 (2.68) BS02 A86 ? GO:0009765 ... B8BX93 37878698
    787789 8iwh:1 (2.68) BS03 DD6 ? GO:0009765 ... B8BX93 37878698
    787790 8iwh:1 (2.68) BS04 DD6 ? GO:0009765 ... B8BX93 37878698
    787791 8iwh:1 (2.68) BS05 CLA ? GO:0009765 ... B8BX93 37878698
    787792 8iwh:1 (2.68) BS06 CLA ? GO:0009765 ... B8BX93 37878698
    787793 8iwh:1 (2.68) BS07 CLA ? GO:0009765 ... B8BX93 37878698
    787794 8iwh:1 (2.68) BS08 CLA ? GO:0009765 ... B8BX93 37878698
    787795 8iwh:1 (2.68) BS09 CLA ? GO:0009765 ... B8BX93 37878698
    787796 8iwh:1 (2.68) BS10 CLA ? GO:0009765 ... B8BX93 37878698
    787797 8iwh:1 (2.68) BS11 CLA ? GO:0009765 ... B8BX93 37878698
    787798 8iwh:1 (2.68) BS12 CLA ? GO:0009765 ... B8BX93 37878698
    787799 8iwh:1 (2.68) BS13 CLA ? GO:0009765 ... B8BX93 37878698
    787800 8iwh:1 (2.68) BS14 CLA ? GO:0009765 ... B8BX93 37878698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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