Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 3928 3929 3930 3931 3932 3933 3934 3935 3936 3937 3938 3939 3940 3941 3942 3943 3944 3945 3946 3947 3948 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    787401 8iue:U (4.1) BS01 dna ? GO:0000785 ... P20226 37165065
    787402 8iue:U (4.1) BS02 dna ? GO:0000785 ... P20226 37165065
    787403 8iue:V (4.1) BS01 dna ? GO:0000126 ... Q9HAW0 37165065
    787404 8iue:V (4.1) BS02 dna ? GO:0000126 ... Q9HAW0 37165065
    787405 8iue:W (4.1) BS01 dna ? GO:0000126 ... A6H8Y1 37165065
    787406 8iue:W (4.1) BS02 dna ? GO:0000126 ... A6H8Y1 37165065
    787407 8iuf:C1 (2.81) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787408 8iuf:C1 (2.81) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787409 8iuf:C1 (2.81) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    787410 8iuf:C1 (2.81) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    787411 8iuf:C2 (2.81) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787412 8iuf:C2 (2.81) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787413 8iuf:N4 (2.81) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    787414 8iuf:QC (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787415 8iuf:QC (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787416 8iuf:QD (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    787417 8iuf:Qc (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787418 8iuf:Qc (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787419 8iuf:Qd (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    787420 8iug:0 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787421 8iug:0 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787422 8iug:0 (2.86) BS03 U42 ? GO:0005886 ... A7NQE9 37468106
    787423 8iug:0 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787424 8iug:0 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    787425 8iug:1 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787426 8iug:1 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787427 8iug:1 (2.86) BS03 U4Z ? GO:0005886 ... Q83XD1 37468106
    787428 8iug:2 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787429 8iug:2 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787430 8iug:3 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787431 8iug:3 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787432 8iug:3 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787433 8iug:3 (2.86) BS04 U4Z ? GO:0005886 ... Q83XD1 37468106
    787434 8iug:4 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787435 8iug:4 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787436 8iug:4 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787437 8iug:5 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787438 8iug:5 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787439 8iug:5 (2.86) BS03 U4Z ? GO:0005886 ... Q83XD1 37468106
    787440 8iug:5 (2.86) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    787441 8iug:6 (2.86) BS01 U42 ? GO:0005886 ... A7NQE9 37468106
    787442 8iug:6 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787443 8iug:6 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787444 8iug:6 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787445 8iug:6 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    787446 8iug:7 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787447 8iug:7 (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787448 8iug:7 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787449 8iug:8 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787450 8iug:8 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787451 8iug:8 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787452 8iug:9 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787453 8iug:9 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787454 8iug:9 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787455 8iug:A (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787456 8iug:A (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787457 8iug:B (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787458 8iug:B (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787459 8iug:B (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787460 8iug:C (2.86) BS01 BCL ? GO:0005506 ... Q83XC9 37468106
    787461 8iug:C (2.86) BS02 HEC ? GO:0005506 ... Q83XC9 37468106
    787462 8iug:C (2.86) BS03 HEC ? GO:0005506 ... Q83XC9 37468106
    787463 8iug:C (2.86) BS04 HEC ? GO:0005506 ... Q83XC9 37468106
    787464 8iug:C (2.86) BS05 HEC ? GO:0005506 ... Q83XC9 37468106
    787465 8iug:C (2.86) BS06 CA ? GO:0005506 ... Q83XC9 37468106
    787466 8iug:D (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787467 8iug:D (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787468 8iug:E (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787469 8iug:E (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787470 8iug:E (2.86) BS03 U42 ? GO:0005886 ... A7NQE9 37468106
    787471 8iug:E (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787472 8iug:F (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787473 8iug:F (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787474 8iug:F (2.86) BS03 U4Z ? GO:0005886 ... Q83XD1 37468106
    787475 8iug:G (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787476 8iug:G (2.86) BS02 U42 ? GO:0005886 ... A7NQE9 37468106
    787477 8iug:G (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787478 8iug:G (2.86) BS04 U42 ? GO:0005886 ... A7NQE9 37468106
    787479 8iug:H (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787480 8iug:H (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787481 8iug:H (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787482 8iug:I (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787483 8iug:I (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787484 8iug:I (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787485 8iug:I (2.86) BS04 U42 ? GO:0005886 ... A7NQE9 37468106
    787486 8iug:J (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787487 8iug:J (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787488 8iug:J (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787489 8iug:K (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787490 8iug:K (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787491 8iug:K (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787492 8iug:K (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787493 8iug:L (2.86) BS01 BCL ? GO:0009772 ... Q83XD0 37468106
    787494 8iug:L (2.86) BS02 BCL ? GO:0009772 ... Q83XD0 37468106
    787495 8iug:L (2.86) BS03 BPH ? GO:0009772 ... Q83XD0 37468106
    787496 8iug:L (2.86) BS04 MQE ? GO:0009772 ... Q83XD0 37468106
    787497 8iug:L (2.86) BS05 BPH ? GO:0009772 ... Q83XD0 37468106
    787498 8iug:L (2.86) BS06 BPH ? GO:0009772 ... Q83XD0 37468106
    787499 8iug:L (2.86) BS07 MN ? GO:0009772 ... Q83XD0 37468106
    787500 8iug:L (2.86) BS08 MQE ? GO:0009772 ... Q83XD0 37468106
    787501 8iug:M (2.86) BS01 BCL ? GO:0009772 ... Q83XD0 37468106
    787502 8iug:M (2.86) BS02 BPH ? GO:0009772 ... Q83XD0 37468106
    787503 8iug:M (2.86) BS03 BPH ? GO:0009772 ... Q83XD0 37468106
    787504 8iug:M (2.86) BS04 BCL ? GO:0009772 ... Q83XD0 37468106
    787505 8iug:M (2.86) BS05 BPH ? GO:0009772 ... Q83XD0 37468106
    787506 8iug:M (2.86) BS06 MN ? GO:0009772 ... Q83XD0 37468106
    787507 8iug:M (2.86) BS07 MQE ? GO:0009772 ... Q83XD0 37468106
    787508 8iug:N (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787509 8iug:N (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787510 8iug:N (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787511 8iug:O (2.86) BS01 U42 ? GO:0005886 ... A7NQE9 37468106
    787512 8iug:O (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787513 8iug:O (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787514 8iug:O (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787515 8iug:P (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787516 8iug:P (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787517 8iug:P (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787518 8iug:Q (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787519 8iug:Q (2.86) BS02 U42 ? GO:0005886 ... A7NQE9 37468106
    787520 8iug:Q (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787521 8iug:Q (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787522 8iug:R (2.86) BS01 MQE ? GO:0005886 ... Q83XD1 37468106
    787523 8iug:R (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    787524 8iug:R (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787525 8iug:R (2.86) BS04 U4Z ? GO:0005886 ... Q83XD1 37468106
    787526 8iug:S (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787527 8iug:S (2.86) BS02 U42 ? GO:0005886 ... A7NQE9 37468106
    787528 8iug:S (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787529 8iug:S (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787530 8iug:T (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787531 8iug:T (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787532 8iug:T (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787533 8iug:U (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787534 8iug:U (2.86) BS02 U42 ? GO:0005886 ... A7NQE9 37468106
    787535 8iug:U (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787536 8iug:U (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787537 8iug:U (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    787538 8iug:V (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    787539 8iug:V (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    787540 8iug:V (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    787541 8iug:V (2.86) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    787542 8iug:W (2.86) BS01 U42 ? GO:0005886 ... A7NQE9 37468106
    787543 8iug:W (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787544 8iug:W (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787545 8iug:W (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    787546 8iuh:3 (3.4) BS01 dna ? GO:0000978 ... Q92966 37165065
    787547 8iuh:3 (3.4) BS02 dna ? GO:0000978 ... Q92966 37165065
    787548 8iuh:4 (3.4) BS01 dna ? GO:0000978 ... Q5SXM2 37165065
    787549 8iuh:4 (3.4) BS02 dna ? GO:0000978 ... Q5SXM2 37165065
    787550 8iuh:A (3.4) BS01 dna 2.7.7.6 GO:0000287 ... O14802 37165065
    787551 8iuh:A (3.4) BS02 dna 2.7.7.6 GO:0000287 ... O14802 37165065
    787552 8iuh:A (3.4) BS03 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    787553 8iuh:A (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    787554 8iuh:A (3.4) BS05 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    787555 8iuh:B (3.4) BS01 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    787556 8iuh:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    787557 8iuh:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    787558 8iuh:E (3.4) BS01 dna ? GO:0000428 ... P19388 37165065
    787559 8iuh:I (3.4) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    787560 8iuh:I (3.4) BS02 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    787561 8iuh:J (3.4) BS01 ZN ? GO:0000428 ... P62875 37165065
    787562 8iuh:L (3.4) BS01 ZN ? GO:0000428 ... P53803 37165065
    787563 8iuh:P (3.4) BS01 dna ? GO:0000428 ... Q9H1D9 37165065
    787564 8iuh:P (3.4) BS02 SF4 ? GO:0000428 ... Q9H1D9 37165065
    787565 8iuh:U (3.4) BS01 dna ? GO:0000785 ... P20226 37165065
    787566 8iuh:U (3.4) BS02 dna ? GO:0000785 ... P20226 37165065
    787567 8iuh:V (3.4) BS01 dna ? GO:0000126 ... Q9HAW0 37165065
    787568 8iuh:V (3.4) BS02 dna ? GO:0000126 ... Q9HAW0 37165065
    787569 8iuh:W (3.4) BS01 dna ? GO:0000126 ... A6H8Y1 37165065
    787570 8iuh:W (3.4) BS02 dna ? GO:0000126 ... A6H8Y1 37165065
    787571 8iui:A (1.56) BS01 E64 ? GO:0006508 ... Q6T9Z7 N/A
    787572 8iui:B (1.56) BS01 E64 ? GO:0006508 ... Q6T9Z7 N/A
    787573 8iuj:C1 (3.06) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787574 8iuj:C1 (3.06) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787575 8iuj:C1 (3.06) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    787576 8iuj:C1 (3.06) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    787577 8iuj:C1 (3.06) BS05 S12 7.1.1.9 GO:0004129 ... Q34463 38388527
    787578 8iuj:C2 (3.06) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787579 8iuj:C2 (3.06) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787580 8iuj:QC (3.06) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787581 8iuj:QC (3.06) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787582 8iuj:QD (3.06) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    787583 8iuj:Qc (3.06) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787584 8iuj:Qc (3.06) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    787585 8iuj:Qd (3.06) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    787586 8iuj:c1 (3.06) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787587 8iuj:c1 (3.06) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    787588 8iuj:c1 (3.06) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    787589 8iuj:c1 (3.06) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    787590 8iuj:c2 (3.06) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787591 8iuj:c2 (3.06) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    787592 8iuk:R (2.67) BS01 UGU ? GO:0004930 ... P43088 37160891
    787593 8iul:R (2.78) BS01 7WT ? GO:0004930 ... P43088 37160891
    787594 8ium:R (3.14) BS01 S2F ? GO:0004930 ... P43088 37160891
    787595 8iun:0 (2.85) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    787596 8iun:0 (2.85) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    787597 8iun:0 (2.85) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    787598 8iun:0 (2.85) BS04 U4Z ? GO:0005886 ... A7NQE9 37468106
    787599 8iun:0 (2.85) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    787600 8iun:1 (2.85) BS01 BCL ? GO:0005886 ... Q83XD1 37468106

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218