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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    786601 8ire:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786602 8ire:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786603 8ire:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786604 8ire:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786605 8ire:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786606 8ire:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786607 8ire:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    786608 8ire:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786609 8ire:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786610 8ire:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786611 8ire:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786612 8ire:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786613 8ire:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786614 8ire:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786615 8ire:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786616 8ire:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786617 8ire:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786618 8ire:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786619 8ire:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786620 8ire:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786621 8ire:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786622 8ire:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786623 8ire:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786624 8ire:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786625 8ire:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786626 8ire:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786627 8ire:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786628 8ire:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786629 8ire:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786630 8ire:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786631 8ire:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786632 8ire:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    786633 8ire:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    786634 8ire:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    786635 8ire:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    786636 8ire:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    786637 8ire:H (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    786638 8ire:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    786639 8ire:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786640 8ire:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    786641 8ire:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    786642 8ire:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    786643 8ire:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786644 8ire:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786645 8ire:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786646 8ire:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786647 8ire:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786648 8ire:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786649 8ire:a (2.25) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786650 8ire:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786651 8ire:a (2.25) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786652 8ire:a (2.25) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786653 8ire:a (2.25) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786654 8ire:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786655 8ire:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786656 8ire:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786657 8ire:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786658 8ire:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786659 8ire:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786660 8ire:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786661 8ire:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786662 8ire:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786663 8ire:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786664 8ire:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786665 8ire:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786666 8ire:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786667 8ire:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786668 8ire:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786669 8ire:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786670 8ire:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786671 8ire:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786672 8ire:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786673 8ire:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786674 8ire:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786675 8ire:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786676 8ire:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786677 8ire:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786678 8ire:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786679 8ire:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786680 8ire:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786681 8ire:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786682 8ire:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786683 8ire:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786684 8ire:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786685 8ire:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    786686 8ire:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786687 8ire:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786688 8ire:d (2.25) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786689 8ire:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786690 8ire:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786691 8ire:d (2.25) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786692 8ire:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786693 8ire:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786694 8ire:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786695 8ire:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    786696 8ire:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    786697 8ire:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    786698 8ire:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    786699 8ire:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    786700 8ire:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    786701 8ire:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786702 8ire:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    786703 8ire:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    786704 8ire:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    786705 8ire:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786706 8ire:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786707 8ire:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    786708 8ire:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786709 8irf:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786710 8irf:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786711 8irf:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786712 8irf:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786713 8irf:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786714 8irf:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786715 8irf:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786716 8irf:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786717 8irf:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786718 8irf:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786719 8irf:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786720 8irf:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786721 8irf:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786722 8irf:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786723 8irf:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786724 8irf:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786725 8irf:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786726 8irf:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786727 8irf:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786728 8irf:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786729 8irf:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786730 8irf:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786731 8irf:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786732 8irf:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786733 8irf:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    786734 8irf:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786735 8irf:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786736 8irf:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786737 8irf:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786738 8irf:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786739 8irf:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786740 8irf:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786741 8irf:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786742 8irf:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786743 8irf:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786744 8irf:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786745 8irf:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786746 8irf:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786747 8irf:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786748 8irf:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786749 8irf:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786750 8irf:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786751 8irf:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786752 8irf:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786753 8irf:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786754 8irf:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786755 8irf:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786756 8irf:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786757 8irf:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786758 8irf:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    786759 8irf:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    786760 8irf:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    786761 8irf:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    786762 8irf:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    786763 8irf:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    786764 8irf:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786765 8irf:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    786766 8irf:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    786767 8irf:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    786768 8irf:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786769 8irf:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786770 8irf:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786771 8irf:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786772 8irf:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786773 8irf:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786774 8irf:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786775 8irf:a (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786776 8irf:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786777 8irf:a (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786778 8irf:a (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786779 8irf:a (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786780 8irf:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786781 8irf:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786782 8irf:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786783 8irf:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786784 8irf:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786785 8irf:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786786 8irf:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786787 8irf:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786788 8irf:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786789 8irf:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786790 8irf:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786791 8irf:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786792 8irf:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786793 8irf:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786794 8irf:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786795 8irf:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786796 8irf:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786797 8irf:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786798 8irf:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786799 8irf:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786800 8irf:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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