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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    786401 8irc:a (2.25) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786402 8irc:a (2.25) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786403 8irc:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786404 8irc:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786405 8irc:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786406 8irc:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786407 8irc:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786408 8irc:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786409 8irc:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786410 8irc:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786411 8irc:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786412 8irc:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786413 8irc:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786414 8irc:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786415 8irc:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786416 8irc:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786417 8irc:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786418 8irc:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    786419 8irc:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786420 8irc:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786421 8irc:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786422 8irc:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786423 8irc:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786424 8irc:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786425 8irc:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786426 8irc:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786427 8irc:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786428 8irc:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786429 8irc:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786430 8irc:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786431 8irc:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786432 8irc:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786433 8irc:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786434 8irc:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    786435 8irc:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786436 8irc:d (2.25) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786437 8irc:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786438 8irc:d (2.25) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786439 8irc:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786440 8irc:d (2.25) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786441 8irc:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786442 8irc:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786443 8irc:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786444 8irc:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    786445 8irc:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    786446 8irc:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    786447 8irc:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    786448 8irc:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    786449 8irc:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    786450 8irc:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786451 8irc:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    786452 8irc:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    786453 8irc:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    786454 8irc:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786455 8irc:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786456 8irc:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    786457 8irc:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786458 8ird:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786459 8ird:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786460 8ird:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786461 8ird:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786462 8ird:A (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786463 8ird:A (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786464 8ird:A (2.3) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786465 8ird:A (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786466 8ird:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786467 8ird:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786468 8ird:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786469 8ird:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786470 8ird:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786471 8ird:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786472 8ird:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786473 8ird:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786474 8ird:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786475 8ird:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786476 8ird:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786477 8ird:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786478 8ird:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786479 8ird:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786480 8ird:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786481 8ird:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786482 8ird:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    786483 8ird:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786484 8ird:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786485 8ird:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786486 8ird:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786487 8ird:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786488 8ird:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786489 8ird:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786490 8ird:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786491 8ird:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786492 8ird:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786493 8ird:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786494 8ird:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786495 8ird:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786496 8ird:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786497 8ird:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786498 8ird:D (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786499 8ird:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786500 8ird:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786501 8ird:D (2.3) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786502 8ird:D (2.3) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786503 8ird:D (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786504 8ird:D (2.3) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786505 8ird:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786506 8ird:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786507 8ird:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    786508 8ird:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    786509 8ird:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    786510 8ird:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    786511 8ird:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    786512 8ird:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    786513 8ird:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786514 8ird:K (2.3) BS01 peptide ? GO:0005737 ... P19054 38297122
    786515 8ird:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    786516 8ird:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    786517 8ird:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786518 8ird:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786519 8ird:Z (2.3) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786520 8ird:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786521 8ird:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786522 8ird:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786523 8ird:a (2.3) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786524 8ird:a (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786525 8ird:a (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786526 8ird:a (2.3) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786527 8ird:a (2.3) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786528 8ird:a (2.3) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786529 8ird:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786530 8ird:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786531 8ird:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786532 8ird:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786533 8ird:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786534 8ird:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786535 8ird:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786536 8ird:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786537 8ird:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    786538 8ird:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    786539 8ird:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    786540 8ird:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    786541 8ird:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    786542 8ird:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    786543 8ird:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    786544 8ird:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    786545 8ird:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    786546 8ird:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    786547 8ird:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    786548 8ird:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    786549 8ird:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    786550 8ird:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    786551 8ird:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    786552 8ird:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    786553 8ird:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    786554 8ird:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    786555 8ird:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    786556 8ird:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    786557 8ird:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    786558 8ird:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    786559 8ird:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    786560 8ird:d (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786561 8ird:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786562 8ird:d (2.3) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786563 8ird:d (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786564 8ird:d (2.3) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786565 8ird:d (2.3) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786566 8ird:d (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786567 8ird:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786568 8ird:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786569 8ird:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    786570 8ird:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    786571 8ird:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    786572 8ird:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    786573 8ird:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    786574 8ird:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    786575 8ird:j (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    786576 8ird:k (2.3) BS01 peptide ? GO:0005737 ... P19054 38297122
    786577 8ird:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    786578 8ird:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    786579 8ird:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    786580 8ird:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    786581 8ird:x (2.3) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    786582 8ird:z (2.3) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    786583 8ire:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    786584 8ire:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786585 8ire:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786586 8ire:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786587 8ire:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786588 8ire:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    786589 8ire:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    786590 8ire:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    786591 8ire:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    786592 8ire:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    786593 8ire:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    786594 8ire:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    786595 8ire:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    786596 8ire:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    786597 8ire:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    786598 8ire:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    786599 8ire:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    786600 8ire:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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