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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785801 8ir7:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785802 8ir7:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785803 8ir7:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785804 8ir7:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785805 8ir7:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    785806 8ir7:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785807 8ir7:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785808 8ir7:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785809 8ir7:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785810 8ir7:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785811 8ir7:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785812 8ir7:d (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785813 8ir7:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785814 8ir7:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785815 8ir7:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    785816 8ir7:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    785817 8ir7:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    785818 8ir7:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    785819 8ir7:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    785820 8ir7:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    785821 8ir7:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    785822 8ir7:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785823 8ir7:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    785824 8ir7:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    785825 8ir7:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    785826 8ir7:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785827 8ir7:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785828 8ir7:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785829 8ir8:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785830 8ir8:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785831 8ir8:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785832 8ir8:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785833 8ir8:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785834 8ir8:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785835 8ir8:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785836 8ir8:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785837 8ir8:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785838 8ir8:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785839 8ir8:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785840 8ir8:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785841 8ir8:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785842 8ir8:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785843 8ir8:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785844 8ir8:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785845 8ir8:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785846 8ir8:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785847 8ir8:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785848 8ir8:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785849 8ir8:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785850 8ir8:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785851 8ir8:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785852 8ir8:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785853 8ir8:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    785854 8ir8:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785855 8ir8:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785856 8ir8:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785857 8ir8:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785858 8ir8:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785859 8ir8:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785860 8ir8:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785861 8ir8:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785862 8ir8:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785863 8ir8:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785864 8ir8:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785865 8ir8:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785866 8ir8:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785867 8ir8:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785868 8ir8:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785869 8ir8:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785870 8ir8:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785871 8ir8:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785872 8ir8:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785873 8ir8:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785874 8ir8:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785875 8ir8:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785876 8ir8:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785877 8ir8:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785878 8ir8:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    785879 8ir8:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    785880 8ir8:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    785881 8ir8:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    785882 8ir8:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    785883 8ir8:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    785884 8ir8:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785885 8ir8:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    785886 8ir8:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    785887 8ir8:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    785888 8ir8:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785889 8ir8:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785890 8ir8:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785891 8ir8:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785892 8ir8:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785893 8ir8:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785894 8ir8:a (2.25) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785895 8ir8:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785896 8ir8:a (2.25) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785897 8ir8:a (2.25) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785898 8ir8:a (2.25) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785899 8ir8:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785900 8ir8:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785901 8ir8:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785902 8ir8:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785903 8ir8:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785904 8ir8:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785905 8ir8:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785906 8ir8:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785907 8ir8:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785908 8ir8:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785909 8ir8:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785910 8ir8:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785911 8ir8:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785912 8ir8:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785913 8ir8:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785914 8ir8:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785915 8ir8:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785916 8ir8:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785917 8ir8:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785918 8ir8:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785919 8ir8:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785920 8ir8:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785921 8ir8:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785922 8ir8:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785923 8ir8:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785924 8ir8:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785925 8ir8:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785926 8ir8:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785927 8ir8:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785928 8ir8:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785929 8ir8:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785930 8ir8:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    785931 8ir8:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785932 8ir8:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785933 8ir8:d (2.25) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785934 8ir8:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785935 8ir8:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785936 8ir8:d (2.25) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785937 8ir8:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785938 8ir8:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785939 8ir8:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785940 8ir8:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    785941 8ir8:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    785942 8ir8:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    785943 8ir8:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    785944 8ir8:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    785945 8ir8:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    785946 8ir8:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    785947 8ir8:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785948 8ir8:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    785949 8ir8:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    785950 8ir8:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    785951 8ir8:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785952 8ir8:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785953 8ir8:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    785954 8ir8:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785955 8ir9:A (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785956 8ir9:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785957 8ir9:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785958 8ir9:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785959 8ir9:A (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785960 8ir9:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785961 8ir9:A (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785962 8ir9:A (2.2) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785963 8ir9:A (2.2) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785964 8ir9:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785965 8ir9:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785966 8ir9:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785967 8ir9:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785968 8ir9:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785969 8ir9:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785970 8ir9:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785971 8ir9:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785972 8ir9:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785973 8ir9:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785974 8ir9:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785975 8ir9:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785976 8ir9:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785977 8ir9:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785978 8ir9:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785979 8ir9:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    785980 8ir9:C (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785981 8ir9:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785982 8ir9:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785983 8ir9:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785984 8ir9:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785985 8ir9:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785986 8ir9:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785987 8ir9:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785988 8ir9:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785989 8ir9:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785990 8ir9:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785991 8ir9:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785992 8ir9:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785993 8ir9:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785994 8ir9:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785995 8ir9:D (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785996 8ir9:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785997 8ir9:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785998 8ir9:D (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785999 8ir9:D (2.2) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    786000 8ir9:D (2.2) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218