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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785601 8ir6:C (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785602 8ir6:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785603 8ir6:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785604 8ir6:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785605 8ir6:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785606 8ir6:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785607 8ir6:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785608 8ir6:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785609 8ir6:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785610 8ir6:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785611 8ir6:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785612 8ir6:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785613 8ir6:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785614 8ir6:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785615 8ir6:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785616 8ir6:D (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785617 8ir6:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785618 8ir6:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785619 8ir6:D (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785620 8ir6:D (2.2) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785621 8ir6:D (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785622 8ir6:D (2.2) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785623 8ir6:D (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785624 8ir6:D (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785625 8ir6:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    785626 8ir6:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    785627 8ir6:H (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    785628 8ir6:H (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    785629 8ir6:H (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    785630 8ir6:I (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    785631 8ir6:J (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785632 8ir6:K (2.2) BS01 peptide ? GO:0005737 ... P19054 38297122
    785633 8ir6:K (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    785634 8ir6:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    785635 8ir6:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785636 8ir6:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785637 8ir6:Z (2.2) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785638 8ir6:a (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785639 8ir6:a (2.2) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785640 8ir6:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785641 8ir6:a (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785642 8ir6:a (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785643 8ir6:a (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785644 8ir6:a (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785645 8ir6:a (2.2) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785646 8ir6:a (2.2) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785647 8ir6:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785648 8ir6:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785649 8ir6:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785650 8ir6:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785651 8ir6:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785652 8ir6:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785653 8ir6:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785654 8ir6:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785655 8ir6:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785656 8ir6:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785657 8ir6:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785658 8ir6:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785659 8ir6:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785660 8ir6:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785661 8ir6:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785662 8ir6:c (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785663 8ir6:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785664 8ir6:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785665 8ir6:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785666 8ir6:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785667 8ir6:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785668 8ir6:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785669 8ir6:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785670 8ir6:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785671 8ir6:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785672 8ir6:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785673 8ir6:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785674 8ir6:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785675 8ir6:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785676 8ir6:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785677 8ir6:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    785678 8ir6:d (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785679 8ir6:d (2.2) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785680 8ir6:d (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785681 8ir6:d (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785682 8ir6:d (2.2) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785683 8ir6:d (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785684 8ir6:d (2.2) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785685 8ir6:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785686 8ir6:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785687 8ir6:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    785688 8ir6:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    785689 8ir6:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    785690 8ir6:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    785691 8ir6:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    785692 8ir6:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    785693 8ir6:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    785694 8ir6:j (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785695 8ir6:k (2.2) BS01 peptide ? GO:0005737 ... P19054 38297122
    785696 8ir6:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    785697 8ir6:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    785698 8ir6:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785699 8ir6:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785700 8ir6:x (2.2) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    785701 8ir6:z (2.2) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785702 8ir7:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785703 8ir7:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785704 8ir7:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785705 8ir7:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785706 8ir7:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785707 8ir7:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785708 8ir7:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785709 8ir7:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785710 8ir7:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785711 8ir7:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785712 8ir7:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785713 8ir7:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785714 8ir7:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785715 8ir7:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785716 8ir7:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785717 8ir7:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785718 8ir7:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785719 8ir7:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785720 8ir7:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785721 8ir7:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785722 8ir7:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785723 8ir7:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785724 8ir7:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785725 8ir7:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785726 8ir7:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    785727 8ir7:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785728 8ir7:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785729 8ir7:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785730 8ir7:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785731 8ir7:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785732 8ir7:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785733 8ir7:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785734 8ir7:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785735 8ir7:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785736 8ir7:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785737 8ir7:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785738 8ir7:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785739 8ir7:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785740 8ir7:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785741 8ir7:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785742 8ir7:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785743 8ir7:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785744 8ir7:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785745 8ir7:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785746 8ir7:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785747 8ir7:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785748 8ir7:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785749 8ir7:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785750 8ir7:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785751 8ir7:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    785752 8ir7:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    785753 8ir7:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    785754 8ir7:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    785755 8ir7:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    785756 8ir7:H (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    785757 8ir7:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    785758 8ir7:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785759 8ir7:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    785760 8ir7:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    785761 8ir7:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    785762 8ir7:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785763 8ir7:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785764 8ir7:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785765 8ir7:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785766 8ir7:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785767 8ir7:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785768 8ir7:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785769 8ir7:a (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785770 8ir7:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785771 8ir7:a (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785772 8ir7:a (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785773 8ir7:a (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785774 8ir7:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785775 8ir7:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785776 8ir7:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785777 8ir7:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785778 8ir7:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785779 8ir7:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785780 8ir7:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785781 8ir7:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785782 8ir7:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785783 8ir7:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785784 8ir7:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785785 8ir7:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785786 8ir7:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785787 8ir7:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785788 8ir7:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785789 8ir7:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    785790 8ir7:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785791 8ir7:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785792 8ir7:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785793 8ir7:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785794 8ir7:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785795 8ir7:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785796 8ir7:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785797 8ir7:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785798 8ir7:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785799 8ir7:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785800 8ir7:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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