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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    785401 8ir3:M (3.5) BS01 rna ? GO:0002181 ... P61927 37491604
    785402 8ir3:M (3.5) BS02 rna ? GO:0002181 ... P61927 37491604
    785403 8ir3:O (3.5) BS01 rna ? GO:0001501 ... P63173 37491604
    785404 8ir3:P (3.5) BS01 rna ? GO:0002181 ... P62891 37491604
    785405 8ir3:P (3.5) BS02 rna ? GO:0002181 ... P62891 37491604
    785406 8ir3:Q (3.5) BS01 rna ? GO:0001824 ... P26373 37491604
    785407 8ir3:Q (3.5) BS02 rna ? GO:0001824 ... P26373 37491604
    785408 8ir3:R (3.5) BS01 rna ? GO:0000027 ... Q15050 37491604
    785409 8ir3:S (3.5) BS01 rna ? GO:0002181 ... P50914 37491604
    785410 8ir3:T (3.5) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    785411 8ir3:T (3.5) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    785412 8ir3:U (3.5) BS01 rna ? GO:0002181 ... P61313 37491604
    785413 8ir3:U (3.5) BS02 rna ? GO:0002181 ... P61313 37491604
    785414 8ir3:V (3.5) BS01 rna ? GO:0002181 ... P40429 37491604
    785415 8ir3:X (3.5) BS01 rna ? GO:0002181 ... P61513 37491604
    785416 8ir3:Y (3.5) BS01 rna ? GO:0002181 ... P18621 37491604
    785417 8ir3:Y (3.5) BS02 rna ? GO:0002181 ... P18621 37491604
    785418 8ir3:Z (3.5) BS01 rna ? GO:0002181 ... Q07020 37491604
    785419 8ir3:a (3.5) BS01 rna ? GO:0002181 ... P84098 37491604
    785420 8ir3:b (3.5) BS01 rna ? GO:0002181 ... Q02543 37491604
    785421 8ir3:c (3.5) BS01 rna ? GO:0002181 ... P46778 37491604
    785422 8ir3:d (3.5) BS01 rna ? GO:0002181 ... P35268 37491604
    785423 8ir3:e (3.5) BS01 rna ? GO:0000122 ... P62829 37491604
    785424 8ir3:f (3.5) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    785425 8ir3:f (3.5) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    785426 8ir3:g (3.5) BS01 rna ? GO:0000027 ... P62750 37491604
    785427 8ir3:g (3.5) BS02 rna ? GO:0000027 ... P62750 37491604
    785428 8ir3:h (3.5) BS01 rna ? GO:0002181 ... P61254 37491604
    785429 8ir3:h (3.5) BS02 rna ? GO:0002181 ... P61254 37491604
    785430 8ir3:i (3.5) BS01 rna ? GO:0002181 ... P61353 37491604
    785431 8ir3:j (3.5) BS01 rna ? GO:0002181 ... P62899 37491604
    785432 8ir3:k (3.5) BS01 rna ? GO:0002181 ... P62910 37491604
    785433 8ir3:l (3.5) BS01 rna ? GO:0002181 ... P46779 37491604
    785434 8ir3:m (3.5) BS01 rna ? GO:0002181 ... P62917 37491604
    785435 8ir3:n (3.5) BS01 rna ? GO:0000049 ... P18077 37491604
    785436 8ir3:o (3.5) BS01 rna ? GO:0000027 ... Q02878 37491604
    785437 8ir3:p (3.5) BS01 rna ? GO:0000463 ... P18124 37491604
    785438 8ir3:q (3.5) BS01 rna ? GO:0000463 ... O00541 37491604
    785439 8ir3:q (3.5) BS02 rna ? GO:0000463 ... O00541 37491604
    785440 8ir3:s (3.5) BS01 rna ? GO:0000462 ... O76021 37491604
    785441 8ir3:t (3.5) BS01 rna ? GO:0000463 ... Q9BYG3 37491604
    785442 8ir3:u (3.5) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    785443 8ir3:u (3.5) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    785444 8ir3:v (3.5) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    785445 8ir3:w (3.5) BS01 rna ? GO:0003723 ... Q13823 37491604
    785446 8ir3:w (3.5) BS02 GTP ? GO:0003723 ... Q13823 37491604
    785447 8ir3:y (3.5) BS01 rna ? GO:0002181 ... P30050 37491604
    785448 8ir3:z (3.5) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    785449 8ir4:A (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    785450 8ir4:B (1.62) BS01 peptide ? GO:2000781 ... Q9BQI6 37748650
    785451 8ir5:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785452 8ir5:A (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785453 8ir5:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785454 8ir5:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785455 8ir5:A (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785456 8ir5:A (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785457 8ir5:A (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785458 8ir5:A (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785459 8ir5:A (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785460 8ir5:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785461 8ir5:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785462 8ir5:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785463 8ir5:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785464 8ir5:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785465 8ir5:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785466 8ir5:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785467 8ir5:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785468 8ir5:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785469 8ir5:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785470 8ir5:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785471 8ir5:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785472 8ir5:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785473 8ir5:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785474 8ir5:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785475 8ir5:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    785476 8ir5:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785477 8ir5:C (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785478 8ir5:C (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785479 8ir5:C (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785480 8ir5:C (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785481 8ir5:C (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785482 8ir5:C (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785483 8ir5:C (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785484 8ir5:C (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785485 8ir5:C (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785486 8ir5:C (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785487 8ir5:C (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785488 8ir5:C (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785489 8ir5:C (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785490 8ir5:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785491 8ir5:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785492 8ir5:D (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785493 8ir5:D (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785494 8ir5:D (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785495 8ir5:D (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785496 8ir5:D (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785497 8ir5:D (2.15) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785498 8ir5:D (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785499 8ir5:D (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785500 8ir5:E (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    785501 8ir5:F (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    785502 8ir5:H (2.15) BS01 CLA ? GO:0009523 ... P19052 38297122
    785503 8ir5:H (2.15) BS02 CLA ? GO:0009523 ... P19052 38297122
    785504 8ir5:H (2.15) BS03 CLA ? GO:0009523 ... P19052 38297122
    785505 8ir5:I (2.15) BS01 CLA ? GO:0005737 ... P12240 38297122
    785506 8ir5:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785507 8ir5:K (2.15) BS01 peptide ? GO:0005737 ... P19054 38297122
    785508 8ir5:K (2.15) BS02 CLA ? GO:0005737 ... P19054 38297122
    785509 8ir5:K (2.15) BS03 CLA ? GO:0005737 ... P19054 38297122
    785510 8ir5:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785511 8ir5:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785512 8ir5:X (2.15) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    785513 8ir5:Z (2.15) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785514 8ir5:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785515 8ir5:a (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785516 8ir5:a (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785517 8ir5:a (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785518 8ir5:a (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785519 8ir5:a (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785520 8ir5:a (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785521 8ir5:a (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785522 8ir5:a (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785523 8ir5:b (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785524 8ir5:b (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785525 8ir5:b (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785526 8ir5:b (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785527 8ir5:b (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785528 8ir5:b (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785529 8ir5:b (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785530 8ir5:b (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785531 8ir5:b (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785532 8ir5:b (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785533 8ir5:b (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785534 8ir5:b (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785535 8ir5:b (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785536 8ir5:b (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785537 8ir5:b (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785538 8ir5:c (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    785539 8ir5:c (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    785540 8ir5:c (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    785541 8ir5:c (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    785542 8ir5:c (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    785543 8ir5:c (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    785544 8ir5:c (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    785545 8ir5:c (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    785546 8ir5:c (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    785547 8ir5:c (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    785548 8ir5:c (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    785549 8ir5:c (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    785550 8ir5:c (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    785551 8ir5:c (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    785552 8ir5:c (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    785553 8ir5:c (2.15) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    785554 8ir5:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785555 8ir5:d (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785556 8ir5:d (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785557 8ir5:d (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785558 8ir5:d (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785559 8ir5:d (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785560 8ir5:d (2.15) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785561 8ir5:d (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785562 8ir5:d (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    785563 8ir5:e (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    785564 8ir5:f (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    785565 8ir5:h (2.15) BS01 CLA ? GO:0009523 ... P19052 38297122
    785566 8ir5:h (2.15) BS02 CLA ? GO:0009523 ... P19052 38297122
    785567 8ir5:h (2.15) BS03 CLA ? GO:0009523 ... P19052 38297122
    785568 8ir5:i (2.15) BS01 CLA ? GO:0005737 ... P12240 38297122
    785569 8ir5:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    785570 8ir5:k (2.15) BS01 peptide ? GO:0005737 ... P19054 38297122
    785571 8ir5:k (2.15) BS02 CLA ? GO:0005737 ... P19054 38297122
    785572 8ir5:k (2.15) BS03 CLA ? GO:0005737 ... P19054 38297122
    785573 8ir5:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    785574 8ir5:v (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    785575 8ir5:z (2.15) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    785576 8ir6:A (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    785577 8ir6:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785578 8ir6:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785579 8ir6:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785580 8ir6:A (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785581 8ir6:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    785582 8ir6:A (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    785583 8ir6:A (2.2) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    785584 8ir6:A (2.2) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    785585 8ir6:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    785586 8ir6:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    785587 8ir6:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    785588 8ir6:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    785589 8ir6:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    785590 8ir6:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    785591 8ir6:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    785592 8ir6:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    785593 8ir6:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    785594 8ir6:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    785595 8ir6:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    785596 8ir6:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    785597 8ir6:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    785598 8ir6:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    785599 8ir6:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    785600 8ir6:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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