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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 1ci7:A (2.6) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5602 1ci7:B (2.6) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5603 1ci7:B (2.6) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 10529228
    5604 1ci9:A (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    5605 1ci9:B (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    5606 1cia:A (2.5) BS01 CO 2.3.1.28 GO:0008811 ... P00484 7906544
    5607 1cib:A (2.3) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5608 1cib:A (2.3) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5609 1cib:A (2.3) BS03 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5610 1cib:A (2.3) BS04 IMP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5611 1cie:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5612 1cif:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7711047
    5613 1cig:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5614 1cih:A (1.8) BS01 HEC ? GO:0005515 ... P00044 7711047
    5615 1cij:A (2.3) BS01 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5616 1cij:A (2.3) BS02 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5617 1cij:A (2.3) BS03 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5618 1cik:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5619 1cil:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5620 1cil:A (1.6) BS02 ETS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=0.372nM
    PDBbind: -logKd/Ki=9.43, Ki=0.37nM
    BindingDB: Ki=9nM, IC50=26.61nM, Kd=0.043000nM
    5621 1cim:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5622 1cim:A (2.1) BS02 PTS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=1.52nM
    PDBbind: -logKd/Ki=8.82, Ki=1.52nM
    BindingDB: Ki=1.5nM
    5623 1cin:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888
    5624 1cin:A (2.1) BS02 MTS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8142888 MOAD: Ki=1.88nM
    PDBbind: -logKd/Ki=8.73, Ki=1.88nM
    BindingDB: Ki=1.9nM
    5625 1cio:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5626 1cip:A (1.5) BS01 MG ? GO:0000287 ... P10824 10358003
    5627 1cip:A (1.5) BS02 GNP ? GO:0000287 ... P10824 10358003
    5628 1ciq:A (2.2) BS01 peptide ? GO:0004867 ... P01053 9079381
    5629 1cir:A (-1.00) BS01 peptide ? GO:0004867 ... P01053 9079381
    5630 1cit:A (2.7) BS01 dna ? GO:0003700 ... P22829 10331876 PDBbind: Kd=1nM
    5631 1cit:A (2.7) BS02 dna ? GO:0003700 ... P22829 10331876 PDBbind: Kd=1nM
    5632 1cit:A (2.7) BS03 ZN ? GO:0003700 ... P22829 10331876
    5633 1cit:A (2.7) BS04 ZN ? GO:0003700 ... P22829 10331876
    5634 1ciu:A (2.3) BS01 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    5635 1ciu:A (2.3) BS02 CA 2.4.1.19 GO:0003824 ... P26827 8604143
    5636 1civ:A (2.8) BS01 NAP 1.1.1.82 GO:0003824 ... P46489 10196131
    5637 1ciw:A (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5638 1ciw:A (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5639 1ciw:A (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5640 1ciw:B (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5641 1ciw:B (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5642 1ciw:B (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5643 1ciw:C (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5644 1ciw:C (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5645 1ciw:C (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5646 1ciw:D (2.7) BS01 GAL ? GO:0030246 ... P02872 10417405
    5647 1ciw:D (2.7) BS02 CA ? GO:0030246 ... P02872 10417405
    5648 1ciw:D (2.7) BS03 MN ? GO:0030246 ... P02872 10417405
    5649 1ciz:A (1.64) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    5650 1ciz:A (1.64) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    5651 1ciz:A (1.64) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5652 1ciz:A (1.64) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5653 1ciz:A (1.64) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    5654 1ciz:A (1.64) BS06 DPS 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=36nM
    PDBbind: -logKd/Ki=7.44, Ki=36nM
    5655 1cj0:A (2.8) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5656 1cj0:A (2.8) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5657 1cj0:B (2.8) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5658 1cj0:B (2.8) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 10387080
    5659 1cj1:A (3.0) BS01 C78 ? N/A P62993 10395476 PDBbind: -logKd/Ki=8.80, IC50=1.6nM
    5660 1cj1:B (3.0) BS01 C78 ? N/A P62993 10395476
    5661 1cj1:C (3.0) BS01 C78 ? N/A P62993 10395476
    5662 1cj1:D (3.0) BS01 C78 ? N/A P62993 10395476
    5663 1cj1:E (3.0) BS01 C78 ? N/A P62993 10395476
    5664 1cj1:F (3.0) BS01 C78 ? N/A P62993 10395476
    5665 1cj1:G (3.0) BS01 C78 ? N/A P62993 10395476
    5666 1cj1:H (3.0) BS01 C78 ? N/A P62993 10395476
    5667 1cj1:I (3.0) BS01 C78 ? N/A P62993 10395476
    5668 1cj1:J (3.0) BS01 C78 ? N/A P62993 10395476
    5669 1cj1:K (3.0) BS01 C78 ? N/A P62993 10395476
    5670 1cj1:L (3.0) BS01 C78 ? N/A P62993 10395476
    5671 1cj2:A (2.8) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5672 1cj3:A (2.5) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5673 1cj4:A (2.4) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 10493859
    5674 1cja:A (2.9) BS01 AMP 2.7.11.1 N/A P80197 10357805
    5675 1cja:B (2.9) BS01 AMP 2.7.11.1 N/A P80197 10357805
    5676 1cjb:A (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5677 1cjb:A (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5678 1cjb:B (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5679 1cjb:B (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5680 1cjb:C (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5681 1cjb:C (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5682 1cjb:D (2.0) BS01 IRP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693 MOAD: Kd=1nM
    5683 1cjb:D (2.0) BS02 POP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P20035 10433693
    5684 1cjc:A (1.7) BS01 FAD 1.18.1.6 GO:0005515 ... P08165 10369776
    5685 1cje:A (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5686 1cje:B (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5687 1cje:C (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5688 1cje:D (2.5) BS01 FES ? GO:0051536 ... P00257 10620322
    5689 1cjf:A (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    5690 1cjf:B (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    5691 1cjf:B (2.3) BS02 peptide ? GO:0000774 ... P07737 10404225
    5692 1cjg:A (-1.00) BS01 dna ? GO:0003677 ... P03023 10647179
    5693 1cjg:A (-1.00) BS02 dna ? GO:0003677 ... P03023 10647179
    5694 1cjg:B (-1.00) BS01 dna ? GO:0003677 ... P03023 10647179
    5695 1cjg:B (-1.00) BS02 dna ? GO:0003677 ... P03023 10647179
    5696 1cjk:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5697 1cjk:A (3.0) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    5698 1cjk:A (3.0) BS03 TAT 4.6.1.1 GO:0009190 ... P30803 10427002
    5699 1cjk:B (3.0) BS01 TAT 4.6.1.1 GO:0009190 ... P26769 10427002
    5700 1cjk:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    5701 1cjk:C (3.0) BS02 GSP ? GO:0003924 ... P04896 10427002
    5702 1cjp:A (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5703 1cjp:A (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5704 1cjp:A (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5705 1cjp:B (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5706 1cjp:B (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5707 1cjp:B (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5708 1cjp:C (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5709 1cjp:C (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5710 1cjp:C (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5711 1cjp:D (2.78) BS01 MUG ? GO:0030246 ... P02866 9087912
    5712 1cjp:D (2.78) BS02 MN ? GO:0030246 ... P02866 9087912
    5713 1cjp:D (2.78) BS03 CA ? GO:0030246 ... P02866 9087912
    5714 1cjq:B (3.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 10409822
    5715 1cjr:B (2.3) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 10409822
    5716 1cjt:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5717 1cjt:A (2.8) BS02 MN 4.6.1.1 GO:0009190 ... P30803 10427002
    5718 1cjt:A (2.8) BS03 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5719 1cjt:A (2.8) BS04 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5720 1cjt:B (2.8) BS01 FOK 4.6.1.1 GO:0009190 ... P26769 10427002
    5721 1cjt:B (2.8) BS02 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5722 1cjt:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    5723 1cjt:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    5724 1cju:A (2.8) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5725 1cju:A (2.8) BS02 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5726 1cju:A (2.8) BS03 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5727 1cju:A (2.8) BS04 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5728 1cju:B (2.8) BS01 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5729 1cju:C (2.8) BS01 MG ? GO:0003924 ... P04896 10427002
    5730 1cju:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    5731 1cjv:A (3.0) BS01 MG 4.6.1.1 GO:0009190 ... P30803 10427002
    5732 1cjv:A (3.0) BS02 FOK 4.6.1.1 GO:0009190 ... P30803 10427002
    5733 1cjv:A (3.0) BS03 DAD 4.6.1.1 GO:0009190 ... P30803 10427002
    5734 1cjv:B (3.0) BS01 DAD 4.6.1.1 GO:0009190 ... P26769 10427002
    5735 1cjv:C (3.0) BS01 MG ? GO:0003924 ... P04896 10427002
    5736 1cjv:C (3.0) BS02 ZN ? GO:0003924 ... P04896 10427002
    5737 1cjv:C (3.0) BS03 GSP ? GO:0003924 ... P04896 10427002
    5738 1cjw:A (1.8) BS01 COT 2.3.1.87 GO:0016747 ... Q29495 10319816
    5739 1cjx:A (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5740 1cjx:A (2.4) BS02 ACT 1.13.11.27 GO:0003868 ... P80064 10467142
    5741 1cjx:B (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5742 1cjx:B (2.4) BS02 ACT 1.13.11.27 GO:0003868 ... P80064 10467142
    5743 1cjx:C (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5744 1cjx:D (2.4) BS01 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5745 1cjx:D (2.4) BS02 FE2 1.13.11.27 GO:0003868 ... P80064 10467142
    5746 1cjy:A (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5747 1cjy:A (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5748 1cjy:B (2.5) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5749 1cjy:B (2.5) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0000139 ... P47712 10319815
    5750 1ck1:A (2.6) BS01 ZN ? GO:0005576 ... Q06535 11934896
    5751 1ck6:A (1.9) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10504224
    5752 1ck6:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    5753 1ck6:A (1.9) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    5754 1ck6:A (1.9) BS04 SHA 1.11.1.7 GO:0000302 ... P28313 10504224
    5755 1ck6:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 10504224
    5756 1ck7:A (2.8) BS01 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    5757 1ck7:A (2.8) BS02 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    5758 1ck7:A (2.8) BS03 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    5759 1ck7:A (2.8) BS04 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    5760 1ck7:A (2.8) BS05 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    5761 1cka:A (1.5) BS01 peptide ? N/A Q64010 7735837
    5762 1ckb:A (1.9) BS01 peptide ? N/A Q64010 7735837
    5763 1ckj:A (2.46) BS01 WO4 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q06486 8648628
    5764 1ckj:B (2.46) BS01 WO4 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q06486 8648628
    5765 1ckk:A (-1.00) BS01 peptide ? GO:0005102 ... P0DP33 10467092
    5766 1ckk:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10467092
    5767 1ckk:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10467092
    5768 1ckk:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10467092
    5769 1ckk:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10467092
    5770 1ckl:A (3.1) BS01 CA ? N/A P15529 10357804
    5771 1ckl:B (3.1) BS01 CA ? N/A P15529 10357804
    5772 1ckl:D (3.1) BS01 CA ? N/A P15529 10357804
    5773 1ckl:E (3.1) BS01 CA ? N/A P15529 10357804
    5774 1ckl:F (3.1) BS01 CA ? N/A P15529 10357804
    5775 1ckm:A (2.5) BS01 GTP 2.7.7.50 GO:0003824 ... Q84424 9160746
    5776 1ckm:B (2.5) BS01 GTP 2.7.7.50 GO:0003824 ... Q84424 9160746
    5777 1ckn:A (2.5) BS01 GTP 2.7.7.50 GO:0003824 ... Q84424 9160746
    5778 1cko:A (3.1) BS01 GP3 2.7.7.50 GO:0003824 ... Q84424 9465045
    5779 1ckp:A (2.05) BS01 PVB 2.7.11.22 GO:0000082 ... P24941 9677190 BindingDB: IC50=6nM
    5780 1ckq:A (1.85) BS01 dna 3.1.21.4 GO:0000287 ... P00642 N/A
    5781 1ckt:A (2.5) BS01 dna ? GO:0003677 ... P63159 10385126
    5782 1ckt:A (2.5) BS02 dna ? GO:0003677 ... P63159 10385126
    5783 1cku:A (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    5784 1cku:B (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    5785 1cl0:A (2.5) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10595539
    5786 1cl1:A (1.83) BS01 BCT 4.4.1.13
    4.4.1.28
    GO:0003824 ... P06721 8831789
    5787 1cl1:B (1.83) BS01 BCT 4.4.1.13
    4.4.1.28
    GO:0003824 ... P06721 8831789
    5788 1cl2:A (2.2) BS01 PPG 4.4.1.13
    4.4.1.28
    GO:0003824 ... P06721 9376370
    5789 1cl2:B (2.2) BS01 PPG 4.4.1.13
    4.4.1.28
    GO:0003824 ... P06721 9376370
    5790 1cl4:A (-1.00) BS01 ZN ? GO:0003676 ... P07567 9827993
    5791 1cl6:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    5792 1cl6:A (1.7) BS02 NO 1.7.1.14 GO:0004497 ... P23295 10671516
    5793 1cl8:A (1.8) BS01 dna 3.1.21.4 GO:0000287 ... P00642 N/A
    5794 1cla:A (2.34) BS01 CO 2.3.1.28 GO:0008811 ... P00484 2109633
    5795 1cla:A (2.34) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 2109633
    5796 1clc:A (1.9) BS01 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    5797 1clc:A (1.9) BS02 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    5798 1clc:A (1.9) BS03 CA 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    5799 1clc:A (1.9) BS04 ZN 3.2.1.4 GO:0000272 ... P0C2S4 N/A
    5800 1cld:A (-1.00) BS01 CD ? GO:0000981 ... P08657 7552715

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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