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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 1cev:C (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5402 1cev:D (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5403 1cev:D (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5404 1cev:E (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5405 1cev:E (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5406 1cev:F (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5407 1cev:F (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    5408 1cez:A (2.4) BS01 dna 2.7.7.6 GO:0000428 ... P00573 10331394
    5409 1cez:A (2.4) BS02 dna 2.7.7.6 GO:0000428 ... P00573 10331394
    5410 1cf0:A (2.2) BS01 peptide ? GO:0000774 ... P07737 10404225
    5411 1cf0:B (2.2) BS01 peptide ? GO:0000774 ... P07737 10404225
    5412 1cf2:O (2.1) BS01 NAP 1.2.1.59 GO:0004365 ... P10618 10393306
    5413 1cf2:P (2.1) BS01 NAP 1.2.1.59 GO:0004365 ... P10618 10393306
    5414 1cf2:Q (2.1) BS01 NAP 1.2.1.59 GO:0004365 ... P10618 10393306
    5415 1cf2:R (2.1) BS01 NAP 1.2.1.59 GO:0004365 ... P10618 10393306
    5416 1cf3:A (1.9) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 10216293
    5417 1cf4:A (-1.00) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10360579
    5418 1cf4:A (-1.00) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 10360579
    5419 1cf7:A (2.6) BS01 dna ? GO:0000978 ... Q16254 10090723
    5420 1cf7:A (2.6) BS02 dna ? GO:0000978 ... Q16254 10090723
    5421 1cf7:B (2.6) BS01 dna ? GO:0005667 ... Q14188 10090723
    5422 1cf7:B (2.6) BS02 dna ? GO:0005667 ... Q14188 10090723
    5423 1cf8:H (2.7) BS01 HAZ ? N/A P01867 N/A
    5424 1cf8:L (2.7) BS01 HAZ ? GO:0005576 ... P01837 N/A
    5425 1cf9:A (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    5426 1cf9:B (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    5427 1cf9:C (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    5428 1cf9:D (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    5429 1cfa:A (-1.00) BS01 peptide ? GO:0005576 ... P01031 9007977
    5430 1cff:A (-1.00) BS01 peptide ? GO:0005102 ... P0DP33 10493800
    5431 1cff:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10493800
    5432 1cff:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10493800
    5433 1cff:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10493800
    5434 1cff:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10493800
    5435 1cfj:A (2.6) BS01 GB 3.1.1.7 GO:0001507 ... P04058 10353814
    5436 1cfm:A (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    5437 1cfm:B (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    5438 1cfm:C (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    5439 1cfn:A (2.65) BS01 peptide ? GO:0005576 ... P01837 9413990
    5440 1cfn:B (2.65) BS01 peptide ? N/A P01864 9413990
    5441 1cfs:A (2.75) BS01 peptide ? GO:0005576 ... P01837 9413990
    5442 1cfs:B (2.75) BS01 peptide ? N/A P01864 9413990
    5443 1cft:A (2.8) BS01 peptide ? GO:0005576 ... P01837 9413990
    5444 1cft:B (2.8) BS01 peptide ? N/A P01864 9413990
    5445 1cfv:H (2.1) BS01 E3G ? GO:0002250 ... P18524 9261086 MOAD: Ka~100000000M^-1
    5446 1cfv:L (2.1) BS01 ZN ? GO:0002250 ... P01631 9261086
    5447 1cfv:L (2.1) BS02 ZN ? GO:0002250 ... P01631 9261086
    5448 1cfv:L (2.1) BS03 E3G ? GO:0002250 ... P01631 9261086
    5449 1cfz:A (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5450 1cfz:B (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5451 1cfz:C (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5452 1cfz:D (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5453 1cfz:E (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5454 1cfz:F (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    5455 1cg0:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5456 1cg0:A (2.5) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5457 1cg0:A (2.5) BS03 IMO 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5458 1cg0:A (2.5) BS04 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5459 1cg1:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5460 1cg1:A (2.5) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5461 1cg1:A (2.5) BS03 IMO 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5462 1cg1:A (2.5) BS04 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5463 1cg2:A (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5464 1cg2:A (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5465 1cg2:B (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5466 1cg2:B (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5467 1cg2:C (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5468 1cg2:C (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5469 1cg2:D (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5470 1cg2:D (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    5471 1cg3:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5472 1cg3:A (2.5) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5473 1cg3:A (2.5) BS03 IMO 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5474 1cg3:A (2.5) BS04 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5475 1cg4:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5476 1cg4:A (2.5) BS02 IMO 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5477 1cg4:A (2.5) BS03 GDP 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    5478 1cg5:A (1.6) BS01 HEM ? GO:0004601 ... P56691 10393295
    5479 1cg5:B (1.6) BS01 HEM ? GO:0004601 ... P56692 10393295
    5480 1cg6:A (1.7) BS01 SO4 2.4.2.28 GO:0003824 ... Q13126 10404592
    5481 1cg6:A (1.7) BS02 MTA 2.4.2.28 GO:0003824 ... Q13126 10404592
    5482 1cg8:A (1.9) BS01 HEM ? GO:0004601 ... P56691 10393295
    5483 1cg8:B (1.9) BS01 HEM ? GO:0004601 ... P56692 10393295
    5484 1cg9:A (2.7) BS01 peptide ? N/A P01889 N/A
    5485 1cge:A (1.9) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5486 1cge:A (1.9) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5487 1cge:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5488 1cge:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5489 1cge:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5490 1cgf:A (2.1) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5491 1cgf:A (2.1) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5492 1cgf:A (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5493 1cgf:A (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5494 1cgf:A (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5495 1cgf:B (2.1) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5496 1cgf:B (2.1) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    5497 1cgf:B (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5498 1cgf:B (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5499 1cgf:B (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    5500 1cgh:A (1.8) BS01 1ZG 3.4.21.20 GO:0002003 ... P08311 8896442
    5501 1cgk:A (1.84) BS01 NAR 2.3.1.74 GO:0009058 ... P30074 10426957
    5502 1cgl:A (2.4) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    5503 1cgl:A (2.4) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    5504 1cgl:A (2.4) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    5505 1cgl:A (2.4) BS04 0ED 3.4.24.7 GO:0004222 ... P03956 8278810 MOAD: Ki=135nM
    PDBbind: -logKd/Ki=6.87, Ki=0.135uM
    5506 1cgl:A (2.4) BS05 0ED 3.4.24.7 GO:0004222 ... P03956 8278810 MOAD: Ki=135nM
    PDBbind: -logKd/Ki=6.87, Ki=0.135uM
    5507 1cgl:B (2.4) BS01 0ED 3.4.24.7 GO:0004222 ... P03956 8278810 MOAD: Ki=135nM
    5508 1cgl:B (2.4) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    5509 1cgl:B (2.4) BS03 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    5510 1cgl:B (2.4) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    5511 1cgl:B (2.4) BS05 0ED 3.4.24.7 GO:0004222 ... P03956 8278810 MOAD: Ki=135nM
    5512 1cgm:E (3.4) BS01 rna ? GO:0005198 ... P69475 8201619
    5513 1cgn:A (2.15) BS01 HEC ? GO:0005506 ... P00138 15299707
    5514 1cgo:A (1.8) BS01 HEC ? GO:0005506 ... P00138 15299707
    5515 1cgp:A (3.0) BS01 dna ? GO:0003677 ... P0ACJ8 1653449
    5516 1cgp:A (3.0) BS02 dna ? GO:0003677 ... P0ACJ8 1653449
    5517 1cgp:A (3.0) BS03 dna ? GO:0003677 ... P0ACJ8 1653449
    5518 1cgp:A (3.0) BS04 CMP ? GO:0003677 ... P0ACJ8 1653449
    5519 1cgp:B (3.0) BS01 dna ? GO:0003677 ... P0ACJ8 1653449
    5520 1cgp:B (3.0) BS02 dna ? GO:0003677 ... P0ACJ8 1653449
    5521 1cgp:B (3.0) BS03 dna ? GO:0003677 ... P0ACJ8 1653449
    5522 1cgp:B (3.0) BS04 CMP ? GO:0003677 ... P0ACJ8 1653449
    5523 1cgp:B (3.0) BS05 CMP ? GO:0003677 ... P0ACJ8 1653449
    5524 1cgt:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    5525 1cgt:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    5526 1cgu:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P30920 1390660
    5527 1cgu:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P30920 1390660
    5528 1cgu:A (2.5) BS03 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    5529 1cgu:A (2.5) BS04 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    5530 1cgv:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5531 1cgv:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5532 1cgv:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5533 1cgv:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5534 1cgv:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5535 1cgv:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5536 1cgv:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5537 1cgv:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5538 1cgw:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5539 1cgw:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5540 1cgw:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5541 1cgw:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5542 1cgw:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5543 1cgw:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5544 1cgw:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5545 1cgw:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5546 1cgx:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5547 1cgx:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5548 1cgx:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5549 1cgx:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5550 1cgx:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5551 1cgx:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5552 1cgx:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5553 1cgx:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5554 1cgy:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5555 1cgy:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5556 1cgy:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5557 1cgy:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5558 1cgy:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5559 1cgy:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    5560 1cgy:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5561 1cgy:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    5562 1cgz:A (1.7) BS01 STL 2.3.1.74 GO:0009058 ... P30074 10426957
    5563 1ch0:A (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    5564 1ch0:C (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    5565 1ch1:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5566 1ch2:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5567 1ch3:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5568 1ch4:A (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5569 1ch4:B (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5570 1ch4:C (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5571 1ch4:D (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    5572 1ch5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5573 1ch7:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5574 1ch8:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5575 1ch8:A (2.5) BS02 GPX 6.3.4.4 GO:0000166 ... P0A7D4 10364182 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    5576 1ch8:A (2.5) BS03 HDA 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5577 1ch8:A (2.5) BS04 IMP 6.3.4.4 GO:0000166 ... P0A7D4 10364182
    5578 1ch9:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    5579 1chc:A (-1.00) BS01 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    5580 1chc:A (-1.00) BS02 ZN 2.3.2.27 GO:0046872 ... P28990 8126734
    5581 1chh:A (1.97) BS01 HEC ? GO:0005515 ... P00044 7819192
    5582 1chi:A (2.0) BS01 HEC ? GO:0005515 ... P00044 7819192
    5583 1chj:A (1.9) BS01 HEC ? GO:0005515 ... P00044 7819192
    5584 1chm:A (1.9) BS01 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5585 1chm:A (1.9) BS02 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5586 1chm:B (1.9) BS01 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5587 1chm:B (1.9) BS02 CMS 3.5.3.3 GO:0016787 ... P38488 1696320 MOAD: Ki=0.22mM
    5588 1chn:A (1.76) BS01 MG ? GO:0000156 ... P0AE67 8176739
    5589 1cho:F (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 3477645
    5590 1cho:G (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 3477645
    5591 1chw:A (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    5592 1chw:B (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    5593 1ci0:A (2.7) BS01 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5594 1ci0:A (2.7) BS02 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5595 1ci0:B (2.7) BS01 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5596 1ci0:B (2.7) BS02 FMN 1.4.3.5 GO:0004733 ... P38075 N/A
    5597 1ci1:B (2.0) BS01 HEX 5.3.1.1 GO:0004807 ... P52270 10468562
    5598 1ci3:M (1.9) BS01 ZN ? GO:0005506 ... P95522 10423236
    5599 1ci3:M (1.9) BS02 HEC ? GO:0005506 ... P95522 10423236
    5600 1ci7:A (2.6) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 10529228

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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