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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46401 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46402 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46403 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46404 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46405 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46406 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46407 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46408 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46409 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46410 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46411 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46412 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46413 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46414 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46415 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46416 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46417 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46418 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46419 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46420 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46421 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46422 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46423 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46424 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46425 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46426 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46427 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46428 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46429 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46430 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46431 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46432 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46433 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46434 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46435 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46436 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46437 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46438 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46439 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46440 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46441 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46442 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46443 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46444 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46445 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46446 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46447 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46448 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46449 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46450 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46451 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46452 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46453 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46454 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46455 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46456 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46457 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46458 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46459 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46460 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46461 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46462 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46463 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46464 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46465 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46466 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46467 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46468 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46469 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46470 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46471 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46472 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46473 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46474 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46475 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46476 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46477 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46478 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46479 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46480 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46481 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46482 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46483 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46484 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46485 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46486 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46487 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46488 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46489 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46490 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46491 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46492 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46493 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46494 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46495 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46496 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46497 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46498 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46499 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46500 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46501 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46502 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46503 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46504 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46505 1rwt:J (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46506 1rwt:J (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46507 1rwt:J (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46508 1rwt:J (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46509 1rwt:J (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46510 1rwt:J (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46511 1rwt:J (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46512 1rwt:J (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46513 1rwt:J (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46514 1rwt:J (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46515 1rwt:J (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46516 1rwt:J (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46517 1rwt:J (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46518 1rwt:J (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46519 1rwv:A (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    46520 1rwv:B (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    46521 1rww:A (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    46522 1rww:B (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    46523 1rwx:A (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    46524 1rwx:B (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    46525 1rwy:A (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    46526 1rwy:A (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    46527 1rwy:B (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    46528 1rwy:B (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    46529 1rwy:C (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    46530 1rwy:C (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    46531 1rx0:A (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46532 1rx0:A (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46533 1rx0:B (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46534 1rx0:B (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46535 1rx0:C (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46536 1rx0:C (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46537 1rx0:C (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46538 1rx0:D (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46539 1rx0:D (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46540 1rx0:D (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    46541 1rx1:A (2.0) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    46542 1rx2:A (1.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46543 1rx3:A (2.2) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    46544 1rx3:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46545 1rx4:A (2.2) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46546 1rx4:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46547 1rx5:A (2.3) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46548 1rx6:A (2.0) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46549 1rx6:A (2.0) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46550 1rx8:A (2.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    46551 1rx9:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    46552 1rxc:A (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46553 1rxc:A (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46554 1rxc:B (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46555 1rxc:B (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46556 1rxc:B (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46557 1rxc:C (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46558 1rxc:C (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46559 1rxc:C (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46560 1rxc:C (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46561 1rxc:D (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46562 1rxc:D (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46563 1rxc:D (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46564 1rxc:D (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46565 1rxc:E (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46566 1rxc:E (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46567 1rxc:E (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46568 1rxc:E (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46569 1rxc:F (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46570 1rxc:F (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46571 1rxc:F (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46572 1rxc:F (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46573 1rxc:I (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46574 1rxc:I (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46575 1rxc:I (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46576 1rxc:J (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46577 1rxc:J (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46578 1rxc:J (2.35) BS03 PO4 2.4.2.3 GO:0003824 ... P12758 15003451
    46579 1rxc:J (2.35) BS04 5UD 2.4.2.3 GO:0003824 ... P12758 15003451
    46580 1rxc:K (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46581 1rxc:K (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46582 1rxc:K (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46583 1rxc:K (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46584 1rxc:L (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46585 1rxc:L (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46586 1rxc:L (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    46587 1rxc:L (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    46588 1rxe:A (1.7) BS01 MNB 1.20.4.4 GO:0004725 ... P0A006 15159594
    46589 1rxf:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    46590 1rxg:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    46591 1rxg:A (1.5) BS02 AKG 1.14.20.1 GO:0005506 ... P18548 9723623
    46592 1rxh:A (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    46593 1rxh:B (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    46594 1rxj:A (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    46595 1rxj:B (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    46596 1rxj:B (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    46597 1rxj:C (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    46598 1rxj:C (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    46599 1rxj:D (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    46600 1rxk:A (1.7) BS01 BNI ? GO:0009374 ... P22629 15079055

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218