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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40801 1ps9:A (2.2) BS04 NAP 1.3.1.34 GO:0005515 ... P42593 12840019
    40802 1ps9:A (2.2) BS05 MDE 1.3.1.34 GO:0005515 ... P42593 12840019
    40803 1psa:A (2.9) BS01 0ZL 3.4.23.1 GO:0004190 ... P00791 1418819
    40804 1psa:B (2.9) BS01 0ZL 3.4.23.1 GO:0004190 ... P00791 1418819
    40805 1psb:A (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    40806 1psb:B (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    40807 1psc:A (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    40808 1psc:A (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    40809 1psc:B (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    40810 1psc:B (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    40811 1psd:A (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    40812 1psd:A (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    40813 1psd:B (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    40814 1psd:B (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    40815 1psh:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    40816 1psh:B (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    40817 1psh:C (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    40818 1psj:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 8636969
    40819 1pso:E (2.0) BS01 peptide 3.4.23.1 GO:0004190 ... P0DJD7 7663352
    40820 1pss:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    40821 1pss:L (3.0) BS02 BPH ? GO:0009772 ... P0C0Y8 8161514
    40822 1pss:L (3.0) BS03 U10 ? GO:0009772 ... P0C0Y8 8161514
    40823 1pss:L (3.0) BS04 FE ? GO:0009772 ... P0C0Y8 8161514
    40824 1pss:L (3.0) BS05 BCL ? GO:0009772 ... P0C0Y8 8161514
    40825 1pss:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    40826 1pss:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    40827 1pss:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    40828 1pss:M (3.0) BS01 BPH ? GO:0009772 ... P0C0Y9 8161514
    40829 1pss:M (3.0) BS02 FE ? GO:0009772 ... P0C0Y9 8161514
    40830 1pss:M (3.0) BS03 BCL ? GO:0009772 ... P0C0Y9 8161514
    40831 1pss:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 8161514
    40832 1pss:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    40833 1pss:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    40834 1pss:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 8161514
    40835 1pss:M (3.0) BS08 CRT ? GO:0009772 ... P0C0Y9 8161514
    40836 1pst:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    40837 1pst:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 8161514
    40838 1pst:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 8161514
    40839 1pst:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 8161514
    40840 1pst:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 8161514
    40841 1pst:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    40842 1pst:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    40843 1pst:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    40844 1pst:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 8161514
    40845 1pst:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 8161514
    40846 1pst:M (3.0) BS03 U10 ? GO:0009772 ... P0C0Y9 8161514
    40847 1pst:M (3.0) BS04 FE ? GO:0009772 ... P0C0Y9 8161514
    40848 1pst:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    40849 1pst:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    40850 1pst:M (3.0) BS07 BPH ? GO:0009772 ... P0C0Y9 8161514
    40851 1pst:M (3.0) BS08 U10 ? GO:0009772 ... P0C0Y9 8161514
    40852 1pst:M (3.0) BS09 CRT ? GO:0009772 ... P0C0Y9 8161514
    40853 1psz:A (2.0) BS01 ZN ? GO:0007155 ... P0A4G2 9862808
    40854 1pt2:A (2.1) BS01 GLC 2.4.1.10 GO:0005576 ... P05655 14517548
    40855 1pt2:A (2.1) BS02 FRU 2.4.1.10 GO:0005576 ... P05655 14517548
    40856 1pt2:A (2.1) BS03 CA 2.4.1.10 GO:0005576 ... P05655 14517548
    40857 1pt3:A (2.5) BS01 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    40858 1pt3:A (2.5) BS02 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    40859 1pt3:B (2.5) BS01 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    40860 1pt3:B (2.5) BS02 dna 3.1.-.- GO:0004519 ... Q47112 14962381
    40861 1pt5:A (2.0) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40862 1pt5:B (2.0) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40863 1pt5:B (2.0) BS02 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40864 1pt6:A (1.87) BS01 MG ? N/A P56199 14660600
    40865 1pt6:B (1.87) BS01 MG ? N/A P56199 14660600
    40866 1pt8:A (2.2) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40867 1pt8:A (2.2) BS02 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40868 1pt8:B (2.2) BS01 ACO 2.8.3.16 GO:0003824 ... P69902 12844490
    40869 1pt9:A (2.42) BS01 TAP 7.1.1.1 N/A Q13423 12791694
    40870 1pt9:B (2.42) BS01 TAP 7.1.1.1 N/A Q13423 12791694
    40871 1ptg:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P14262 7664726
    40872 1pth:A (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    40873 1pth:A (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    40874 1pth:B (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    40875 1pth:B (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    40876 1ptj:A (2.61) BS01 SND 7.1.1.1 GO:0000166 ... Q2RSB2 12791694
    40877 1ptj:C (2.61) BS01 NAP 7.1.1.1 N/A Q2RSB4 12791694
    40878 1ptk:A (2.4) BS01 HG 3.4.21.64 GO:0004252 ... P06873 8253733
    40879 1ptk:A (2.4) BS02 CA 3.4.21.64 GO:0004252 ... P06873 8253733
    40880 1ptm:A (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    40881 1ptm:A (1.96) BS02 PO4 1.1.1.262 GO:0000287 ... P19624 12896974
    40882 1ptm:B (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    40883 1pto:B (3.5) BS01 SIA ? GO:0005576 ... P04978 7634099
    40884 1pto:C (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    40885 1pto:I (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    40886 1ptq:A (1.95) BS01 ZN 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    40887 1ptq:A (1.95) BS02 ZN 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    40888 1ptr:A (2.2) BS01 ZN 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    40889 1ptr:A (2.2) BS02 ZN 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    40890 1ptr:A (2.2) BS03 PRB 2.7.10.2
    2.7.11.13
    N/A P28867 7781068
    40891 1ptt:A (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    40892 1ptu:A (2.6) BS01 peptide 3.1.3.48 GO:0004725 ... P18031 7540771
    40893 1ptv:A (2.3) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 7540771
    40894 1ptw:A (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    40895 1ptw:A (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    40896 1ptw:B (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    40897 1ptw:B (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    40898 1ptw:C (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    40899 1ptw:C (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    40900 1ptw:D (2.3) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 14609333
    40901 1ptw:D (2.3) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 14609333
    40902 1pty:A (1.85) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    40903 1pty:A (1.85) BS02 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    40904 1ptz:A (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40905 1ptz:A (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40906 1ptz:B (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40907 1ptz:B (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40908 1pu0:A (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40909 1pu0:A (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40910 1pu0:B (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40911 1pu0:B (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40912 1pu0:C (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40913 1pu0:C (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40914 1pu0:D (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40915 1pu0:D (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40916 1pu0:E (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40917 1pu0:E (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40918 1pu0:F (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40919 1pu0:F (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40920 1pu0:G (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40921 1pu0:G (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40922 1pu0:H (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40923 1pu0:H (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40924 1pu0:I (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40925 1pu0:I (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40926 1pu0:J (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    40927 1pu0:J (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    40928 1pu4:A (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    40929 1pu4:A (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    40930 1pu4:A (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    40931 1pu4:B (3.2) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    40932 1pu4:B (3.2) BS02 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    40933 1pu4:B (3.2) BS03 CA 1.4.3.21 GO:0005507 ... Q16853 16046623
    40934 1pu7:A (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    40935 1pu7:B (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    40936 1pu8:A (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    40937 1pu8:B (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    40938 1pu9:A (2.3) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 14536085
    40939 1pu9:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    40940 1pua:A (2.3) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 14536085
    40941 1pua:A (2.3) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 14536085
    40942 1pud:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 8654383
    40943 1pue:E (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    40944 1pue:E (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    40945 1pue:F (2.1) BS01 dna ? GO:0003700 ... P17433 8602247
    40946 1pue:F (2.1) BS02 dna ? GO:0003700 ... P17433 8602247
    40947 1puf:A (1.9) BS01 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    40948 1puf:A (1.9) BS02 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    40949 1puf:B (1.9) BS01 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    40950 1puf:B (1.9) BS02 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    40951 1puj:A (2.0) BS01 GNP ? GO:0003723 ... O31743 N/A
    40952 1pum:B (2.3) BS01 GAL 3.2.2.22 N/A P81446 16508080
    40953 1pum:B (2.3) BS02 GAL 3.2.2.22 N/A P81446 16508080
    40954 1pun:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    40955 1pun:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    40956 1puq:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    40957 1puq:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    40958 1pus:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    40959 1pus:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    40960 1put:A (-1.00) BS01 FES ? GO:0005515 ... P00259 8204575
    40961 1puu:B (2.3) BS01 GAL 3.2.2.22 N/A P81446 16508080
    40962 1puu:B (2.3) BS02 GAL 3.2.2.22 N/A P81446 16508080
    40963 1pv4:A (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    40964 1pv4:C (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    40965 1pv4:D (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    40966 1pv4:E (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    40967 1pv4:F (3.0) BS01 dna 3.6.4.- GO:0003676 ... P0AG30 12859904
    40968 1pv8:A (2.2) BS01 PB1 4.2.1.24 GO:0001666 ... P13716 12897770
    40969 1pv9:A (2.0) BS01 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    40970 1pv9:A (2.0) BS02 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    40971 1pv9:B (2.0) BS01 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    40972 1pv9:B (2.0) BS02 ZN 3.4.13.9 GO:0005737 ... P81535 15005612
    40973 1pva:A (1.65) BS01 CA ? GO:0005509 ... P02628 N/A
    40974 1pva:A (1.65) BS02 CA ? GO:0005509 ... P02628 N/A
    40975 1pva:B (1.65) BS01 CA ? GO:0005509 ... P02628 N/A
    40976 1pva:B (1.65) BS02 CA ? GO:0005509 ... P02628 N/A
    40977 1pvb:A (1.75) BS01 CA ? GO:0005509 ... P02619 15299738
    40978 1pvb:A (1.75) BS02 CA ? GO:0005509 ... P02619 15299738
    40979 1pvc:4 (2.4) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03302 N/A
    40980 1pvd:A (2.3) BS01 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40981 1pvd:A (2.3) BS02 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40982 1pvd:A (2.3) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40983 1pvd:B (2.3) BS01 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40984 1pvd:B (2.3) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40985 1pvd:B (2.3) BS03 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 8604141
    40986 1pvf:A (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    40987 1pvf:A (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    40988 1pvf:B (1.78) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 N/A
    40989 1pvf:B (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    40990 1pvg:A (1.8) BS01 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    40991 1pvg:B (1.8) BS01 ANP 5.6.2.2 GO:0003677 ... P06786 12963818
    40992 1pvi:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P23657 8076590
    40993 1pvi:A (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P23657 8076590
    40994 1pvi:B (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P23657 8076590
    40995 1pvi:B (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P23657 8076590
    40996 1pvj:A (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    40997 1pvj:B (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    40998 1pvj:C (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    40999 1pvj:D (3.0) BS01 ZFB 3.4.22.10 GO:0004197 ... P0C0J0 N/A
    41000 1pvm:A (1.5) BS01 HG ? GO:0046872 ... Q9HLD9 18021800

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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