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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38201 1oqu:D (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38202 1oqu:D (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    38203 1oqx:B (2.6) BS01 BMA ? N/A P01857 N/A
    38204 1or4:A (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    38205 1or4:B (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    38206 1or6:A (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    38207 1or6:B (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    38208 1or8:A (2.35) BS01 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38209 1or8:A (2.35) BS02 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38210 1or8:A (2.35) BS03 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38211 1or8:A (2.35) BS04 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38212 1or8:A (2.35) BS05 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38213 1orb:A (2.0) BS01 ACT 2.8.1.1 GO:0003723 ... P00586 8702871
    38214 1ord:A (3.0) BS01 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38215 1ord:A (3.0) BS02 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38216 1ord:B (3.0) BS01 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38217 1ord:B (3.0) BS02 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38218 1ore:A (2.1) BS01 AMP 2.4.2.7 GO:0002055 ... P07741 15196008
    38219 1orf:A (2.4) BS01 0G6 3.4.21.78 GO:0001772 ... P12544 12819769
    38220 1orh:A (2.64) BS01 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38221 1orh:A (2.64) BS02 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38222 1ori:A (2.5) BS01 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38223 1ork:A (2.4) BS01 ATC ? GO:0000976 ... P0ACT4 9878420 MOAD: Kd=1.56nM
    PDBbind: -logKd/Ki=8.81, Kd=1.56nM
    38224 1oro:A (2.4) BS01 SO4 2.4.2.10 GO:0000287 ... P0A7E3 8620002
    38225 1orr:A (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38226 1orr:A (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38227 1orr:B (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38228 1orr:B (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38229 1orr:C (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38230 1orr:C (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38231 1orr:D (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38232 1orr:D (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38233 1orw:A (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    38234 1orw:A (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    38235 1orw:B (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38236 1orw:B (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38237 1orw:C (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38238 1orw:C (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38239 1orw:D (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38240 1orw:D (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38241 1os0:A (2.1) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 12832763
    38242 1os0:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38243 1os0:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38244 1os0:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38245 1os0:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38246 1os0:A (2.1) BS06 0PQ 3.4.24.27 GO:0004222 ... P00800 12832763 MOAD: Ki=0.93uM
    PDBbind: -logKd/Ki=6.03, Ki=0.93uM
    38247 1os1:A (1.8) BS01 CA 4.1.1.49 GO:0000287 ... P22259 12837799
    38248 1os1:A (1.8) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 12837799
    38249 1os1:A (1.8) BS03 PYR 4.1.1.49 GO:0000287 ... P22259 12837799
    38250 1os2:A (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38251 1os2:A (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38252 1os2:A (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38253 1os2:A (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38254 1os2:A (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38255 1os2:B (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38256 1os2:B (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38257 1os2:B (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38258 1os2:B (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38259 1os2:B (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38260 1os2:C (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38261 1os2:C (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38262 1os2:C (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38263 1os2:C (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38264 1os2:C (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38265 1os2:C (2.15) BS06 AZI 3.4.24.65 GO:0004222 ... P39900 12813751
    38266 1os2:D (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38267 1os2:D (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38268 1os2:D (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38269 1os2:D (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38270 1os2:D (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38271 1os2:E (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38272 1os2:E (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38273 1os2:E (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38274 1os2:E (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38275 1os2:E (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38276 1os2:F (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38277 1os2:F (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38278 1os2:F (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38279 1os2:F (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38280 1os2:F (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38281 1os5:A (2.2) BS01 NH1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 12805457 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    38282 1os6:A (1.45) BS01 HEC ? GO:0009055 ... Q8GGK7 14744127
    38283 1os6:A (1.45) BS02 HEC ? GO:0009055 ... Q8GGK7 14744127
    38284 1os6:A (1.45) BS03 HEC ? GO:0009055 ... Q8GGK7 14744127
    38285 1os6:A (1.45) BS04 DXC ? GO:0009055 ... Q8GGK7 14744127
    38286 1os7:A (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38287 1os7:A (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38288 1os7:B (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38289 1os7:B (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38290 1os7:C (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38291 1os7:C (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38292 1os7:D (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38293 1os7:D (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38294 1os8:A (1.55) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    38295 1os9:A (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38296 1os9:A (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38297 1os9:A (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38298 1os9:A (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38299 1os9:A (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38300 1os9:B (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38301 1os9:B (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38302 1os9:B (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38303 1os9:B (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38304 1os9:B (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38305 1os9:C (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38306 1os9:C (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38307 1os9:C (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38308 1os9:C (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38309 1os9:C (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38310 1os9:D (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38311 1os9:D (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38312 1os9:D (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38313 1os9:D (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38314 1os9:D (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38315 1os9:E (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38316 1os9:E (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38317 1os9:E (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38318 1os9:E (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38319 1os9:E (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38320 1os9:F (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38321 1os9:F (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38322 1os9:F (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38323 1os9:F (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38324 1os9:F (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38325 1osa:A (1.68) BS01 CA ? GO:0005509 ... P07463 15299476
    38326 1osa:A (1.68) BS02 CA ? GO:0005509 ... P07463 15299476
    38327 1osa:A (1.68) BS03 CA ? GO:0005509 ... P07463 15299476
    38328 1osa:A (1.68) BS04 CA ? GO:0005509 ... P07463 15299476
    38329 1osb:A (2.65) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    38330 1osb:C (2.65) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    38331 1ose:A (2.3) BS01 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    38332 1ose:A (2.3) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 8681972
    38333 1ose:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    38334 1ose:A (2.3) BS04 BGC 3.2.1.1 GO:0003824 ... P00690 8681972
    38335 1ose:A (2.3) BS05 CA 3.2.1.1 GO:0003824 ... P00690 8681972
    38336 1osf:A (1.75) BS01 KOS 3.6.4.10 GO:0005524 ... P07900 12725864 BindingDB: IC50=919nM
    38337 1osg:A (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38338 1osg:B (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38339 1osg:C (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38340 1osg:C (3.0) BS02 peptide ? GO:0005164 ... Q9Y275 12755599
    38341 1osg:D (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38342 1osg:E (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38343 1osg:F (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    38344 1osh:A (1.8) BS01 FEX ? GO:0003677 ... Q96RI1 12718892
    38345 1osl:A (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    38346 1osl:A (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    38347 1osl:B (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    38348 1osl:B (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    38349 1osn:A (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38350 1osn:A (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38351 1osn:B (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38352 1osn:B (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38353 1osn:C (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38354 1osn:C (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38355 1osn:D (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38356 1osn:D (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    38357 1oss:A (1.93) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    38358 1oss:A (1.93) BS02 BEN 3.4.21.4 GO:0004252 ... P00775 12885239 MOAD: Ki=16.4uM
    PDBbind: -logKd/Ki=4.79, Ki=16.4uM
    38359 1osv:A (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    38360 1osv:A (2.5) BS02 CHC ? GO:0003677 ... Q62735 12718893
    38361 1osv:B (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    38362 1osv:B (2.5) BS02 peptide ? GO:0003677 ... Q62735 12718893
    38363 1osv:B (2.5) BS03 CHC ? GO:0003677 ... Q62735 12718893
    38364 1osz:A (2.1) BS01 peptide ? N/A P01901 9707600
    38365 1ot1:A (2.0) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    38366 1ot1:A (2.0) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38367 1ot1:A (2.0) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38368 1ot1:A (2.0) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38369 1ot1:A (2.0) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38370 1ot1:A (2.0) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38371 1ot1:A (2.0) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38372 1ot1:A (2.0) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38373 1ot1:A (2.0) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38374 1ot1:A (2.0) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38375 1ot1:A (2.0) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38376 1ot1:A (2.0) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38377 1ot1:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38378 1ot1:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38379 1ot2:A (2.1) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    38380 1ot2:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38381 1ot2:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38382 1ot2:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38383 1ot2:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38384 1ot2:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38385 1ot2:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38386 1ot2:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38387 1ot2:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38388 1ot2:A (2.1) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38389 1ot2:A (2.1) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38390 1ot2:A (2.1) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38391 1ot2:A (2.1) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    38392 1ot2:A (2.1) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38393 1ot2:A (2.1) BS15 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    38394 1ot3:A (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38395 1ot3:B (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38396 1ot3:C (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38397 1ot3:D (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38398 1ot3:E (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38399 1ot3:F (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    38400 1ot3:G (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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