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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37801 1ojj:A (1.4) BS02 GAL 3.2.1.4 GO:0004553 ... P56680 12890535
    37802 1ojj:A (1.4) BS03 GLC 3.2.1.4 GO:0004553 ... P56680 12890535
    37803 1ojj:A (1.4) BS04 GAL 3.2.1.4 GO:0004553 ... P56680 12890535
    37804 1ojj:B (1.4) BS01 BGC 3.2.1.4 GO:0004553 ... P56680 12890535
    37805 1ojj:B (1.4) BS02 GAL 3.2.1.4 GO:0004553 ... P56680 12890535
    37806 1ojj:B (1.4) BS03 GLC 3.2.1.4 GO:0004553 ... P56680 12890535
    37807 1ojj:B (1.4) BS04 GAL 3.2.1.4 GO:0004553 ... P56680 12890535
    37808 1ojk:A (1.5) BS01 GLC 3.2.1.4 GO:0004553 ... P56680 12890535
    37809 1ojk:A (1.5) BS02 BGC 3.2.1.4 GO:0004553 ... P56680 12890535
    37810 1ojk:A (1.5) BS03 BGC 3.2.1.4 GO:0004553 ... P56680 12890535
    37811 1ojk:B (1.5) BS01 GLC 3.2.1.4 GO:0004553 ... P56680 12890535
    37812 1ojk:B (1.5) BS02 BGC 3.2.1.4 GO:0004553 ... P56680 12890535
    37813 1ojk:B (1.5) BS03 BGC 3.2.1.4 GO:0004553 ... P56680 12890535
    37814 1ojl:E (3.0) BS01 ATP ? GO:0005524 ... P25852 16005641
    37815 1ojm:A (1.78) BS01 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    37816 1ojn:A (1.6) BS01 NG6 4.2.2.1 GO:0003824 ... Q54873 14523022
    37817 1ojn:A (1.6) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    37818 1ojn:A (1.6) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    37819 1ojo:A (1.75) BS01 ASG 4.2.2.1 GO:0003824 ... Q54873 14523022
    37820 1ojo:A (1.75) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    37821 1ojo:A (1.75) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    37822 1ojp:A (1.9) BS01 NG6 4.2.2.1 GO:0003824 ... Q54873 14523022
    37823 1ojp:A (1.9) BS02 GCD 4.2.2.1 GO:0003824 ... Q54873 14523022
    37824 1ojp:A (1.9) BS03 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    37825 1ojp:A (1.9) BS04 SO4 4.2.2.1 GO:0003824 ... Q54873 14523022
    37826 1ojr:A (1.35) BS01 ZN 4.1.2.19 GO:0005737 ... P32169 12962479
    37827 1ojr:A (1.35) BS02 PO4 4.1.2.19 GO:0005737 ... P32169 12962479
    37828 1ojr:A (1.35) BS03 PO4 4.1.2.19 GO:0005737 ... P32169 12962479
    37829 1ojr:A (1.35) BS04 2HA 4.1.2.19 GO:0005737 ... P32169 12962479
    37830 1ojt:A (2.75) BS01 FAD 1.8.1.4 GO:0004148 ... Q51225 9193005
    37831 1ojz:A (2.02) BS01 NAD ? GO:0000166 ... Q9ADS9 12933793
    37832 1ok7:B (1.65) BS01 peptide 2.7.7.7 GO:0003677 ... P0A988 14729336
    37833 1okc:A (2.2) BS01 CXT ? GO:0005471 ... P02722 14603310
    37834 1okc:A (2.2) BS02 LDM ? GO:0005471 ... P02722 14603310
    37835 1okc:A (2.2) BS03 LDM ? GO:0005471 ... P02722 14603310
    37836 1oke:A (2.4) BS01 FUL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    37837 1oke:B (2.4) BS01 FUL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    37838 1okg:A (2.1) BS01 SO3 2.8.1.2 GO:0004792 ... Q7K9G0 12952945
    37839 1okh:A (1.75) BS01 PO4 ? GO:0006952 ... P01538 14646070
    37840 1okh:B (1.75) BS01 PO4 ? GO:0006952 ... P01538 14646070
    37841 1okk:A (2.05) BS01 BZP 3.6.5.4 GO:0003924 ... O07347 14726591
    37842 1okk:A (2.05) BS02 BZP 3.6.5.4 GO:0003924 ... O07347 14726591
    37843 1okl:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8557623
    37844 1okl:A (2.1) BS02 MNS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8557623 MOAD: Kd=0.93uM
    PDBbind: -logKd/Ki=6.03, Kd=0.93uM
    37845 1okm:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    37846 1okm:A (2.2) BS02 SAB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    37847 1okn:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    37848 1okn:A (2.4) BS02 STB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A MOAD: Kd=2.3nM
    37849 1oko:A (1.6) BS01 CA ? GO:0005737 ... Q05097 14644431
    37850 1oko:A (1.6) BS02 GAL ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37851 1oko:B (1.6) BS01 CA ? GO:0005737 ... Q05097 14644431
    37852 1oko:B (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37853 1oko:B (1.6) BS03 GAL ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37854 1oko:C (1.6) BS01 CA ? GO:0005737 ... Q05097 14644431
    37855 1oko:C (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37856 1oko:C (1.6) BS03 GAL ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37857 1oko:D (1.6) BS01 CA ? GO:0005737 ... Q05097 14644431
    37858 1oko:D (1.6) BS02 GLA ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37859 1oko:D (1.6) BS03 GAL ? GO:0005737 ... Q05097 14644431 MOAD: Ka=34000M^-1
    37860 1okq:A (2.8) BS01 CA ? N/A Q60675 12963372
    37861 1okv:B (2.4) BS01 peptide ? GO:0016538 ... P20248 14656438
    37862 1okv:D (2.4) BS01 peptide ? GO:0016538 ... P20248 14656438
    37863 1okw:B (2.5) BS01 peptide ? GO:0016538 ... P20248 14656438
    37864 1okw:D (2.5) BS01 peptide ? GO:0016538 ... P20248 14656438
    37865 1okx:A (2.8) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 14583266
    37866 1okx:A (2.8) BS02 peptide 3.4.21.36 GO:0004252 ... P00772 14583266
    37867 1okx:B (2.8) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 14583266
    37868 1okx:B (2.8) BS02 peptide 3.4.21.36 GO:0004252 ... P00772 14583266
    37869 1oky:A (2.3) BS01 STU 2.7.11.1 GO:0004672 ... O15530 12892559 MOAD: ic50=6.5nM
    PDBbind: -logKd/Ki=8.19, IC50=6.5nM
    37870 1okz:A (2.51) BS01 UCN 2.7.11.1 GO:0004672 ... O15530 12892559 PDBbind: -logKd/Ki=8.30, IC50=5nM
    37871 1ol1:B (2.9) BS01 peptide ? GO:0016538 ... P20248 14656438
    37872 1ol1:D (2.9) BS01 peptide ? GO:0016538 ... P20248 14656438
    37873 1ol2:B (2.6) BS01 peptide ? GO:0016538 ... P20248 14656438
    37874 1ol2:D (2.6) BS01 peptide ? GO:0016538 ... P20248 14656438
    37875 1ol5:A (2.5) BS01 peptide 2.7.11.1 GO:0000212 ... O14965 14580337
    37876 1ol5:A (2.5) BS02 ADP 2.7.11.1 GO:0000212 ... O14965 14580337
    37877 1ol5:A (2.5) BS03 MG 2.7.11.1 GO:0000212 ... O14965 14580337
    37878 1ol6:A (3.0) BS01 ATP 2.7.11.1 GO:0000212 ... O14965 14580337
    37879 1ol7:A (2.75) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 14580337
    37880 1ol7:A (2.75) BS02 MG 2.7.11.1 GO:0000212 ... O14965 14580337
    37881 1ola:A (2.1) BS01 peptide ? GO:0015031 ... P06202 8202710
    37882 1olc:A (2.1) BS01 peptide ? GO:0015031 ... P06202 8747465
    37883 1olc:A (2.1) BS02 IUM ? GO:0015031 ... P06202 8747465
    37884 1olc:A (2.1) BS03 IUM ? GO:0015031 ... P06202 8747465
    37885 1olm:A (1.95) BS01 VTQ ? GO:0005543 ... O76054 12972248
    37886 1olm:C (1.95) BS01 VTQ ? GO:0005543 ... O76054 12972248
    37887 1olm:E (1.95) BS01 VTQ ? GO:0005543 ... O76054 12972248
    37888 1oln:A (-1.00) BS01 rna ? GO:0003735 ... P29395 12954336
    37889 1olp:A (2.5) BS01 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37890 1olp:A (2.5) BS02 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37891 1olp:A (2.5) BS03 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37892 1olp:A (2.5) BS04 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37893 1olp:A (2.5) BS05 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37894 1olp:B (2.5) BS01 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37895 1olp:B (2.5) BS02 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37896 1olp:B (2.5) BS03 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37897 1olp:B (2.5) BS04 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37898 1olp:B (2.5) BS05 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37899 1olp:C (2.5) BS01 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37900 1olp:C (2.5) BS02 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37901 1olp:C (2.5) BS03 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37902 1olp:C (2.5) BS04 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37903 1olp:C (2.5) BS05 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37904 1olp:D (2.5) BS01 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37905 1olp:D (2.5) BS02 CA 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37906 1olp:D (2.5) BS03 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37907 1olp:D (2.5) BS04 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37908 1olp:D (2.5) BS05 ZN 3.1.4.3 GO:0004629 ... Q8GCY3 14568535
    37909 1ols:A (1.85) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    37910 1ols:A (1.85) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    37911 1olt:A (2.07) BS01 SF4 1.3.98.3 GO:0003824 ... P32131 14633981
    37912 1olt:A (2.07) BS02 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    37913 1olt:A (2.07) BS03 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    37914 1olu:A (1.9) BS01 MG 1.2.4.4 GO:0003863 ... P12694 12902323
    37915 1olu:A (1.9) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    37916 1olx:A (2.25) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    37917 1olx:A (2.25) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    37918 1om1:A (1.68) BS01 IQA 2.7.11.1 GO:0004672 ... P28523 12816539 MOAD: Ki=0.17uM
    PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    37919 1om2:A (-1.00) BS01 peptide ? GO:0005742 ... Q62760 10721992
    37920 1om4:A (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    37921 1om4:A (1.75) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    37922 1om4:A (1.75) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37923 1om4:A (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37924 1om4:A (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    37925 1om4:B (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    37926 1om4:B (1.75) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37927 1om4:B (1.75) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    37928 1om4:B (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37929 1om4:B (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    37930 1om5:A (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    37931 1om5:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    37932 1om5:A (2.3) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37933 1om5:A (2.3) BS04 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    37934 1om5:A (2.3) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37935 1om5:B (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    37936 1om5:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37937 1om5:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    37938 1om5:B (2.3) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    37939 1om5:B (2.3) BS05 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    37940 1om6:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37941 1om6:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37942 1om6:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37943 1om6:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37944 1om6:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37945 1om6:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37946 1om7:A (2.8) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37947 1om7:A (2.8) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37948 1om7:A (2.8) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37949 1om7:A (2.8) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37950 1om7:A (2.8) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37951 1om8:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37952 1om8:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37953 1om8:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37954 1om8:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37955 1om8:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37956 1om8:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37957 1om9:A (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    37958 1om9:B (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    37959 1omd:A (1.85) BS01 CA ? GO:0005509 ... P02631 2231727
    37960 1omd:A (1.85) BS02 CA ? GO:0005509 ... P02631 2231727
    37961 1omd:A (1.85) BS03 CA ? GO:0005509 ... P02631 2231727
    37962 1omh:A (1.95) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    37963 1omj:A (2.38) BS01 ZN 3.4.24.40 GO:0004222 ... O69771 12837794
    37964 1omj:A (2.38) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37965 1omj:A (2.38) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37966 1omj:A (2.38) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37967 1omj:A (2.38) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37968 1omj:A (2.38) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37969 1omj:A (2.38) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37970 1omj:A (2.38) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37971 1omj:A (2.38) BS09 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    37972 1omo:A (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    37973 1omo:B (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    37974 1omr:A (1.5) BS01 CA ? GO:0001750 ... P21457 12686556
    37975 1omv:A (1.9) BS01 CA ? GO:0001750 ... P21457 12686556
    37976 1omz:A (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    37977 1omz:B (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    37978 1on1:A (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    37979 1on1:A (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    37980 1on1:B (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    37981 1on1:B (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    37982 1on2:A (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    37983 1on2:B (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    37984 1on3:A (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37985 1on3:A (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37986 1on3:B (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37987 1on3:B (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37988 1on3:C (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37989 1on3:C (1.9) BS02 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37990 1on3:C (1.9) BS03 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37991 1on3:D (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37992 1on3:D (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37993 1on3:E (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37994 1on3:E (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37995 1on3:F (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37996 1on3:F (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37997 1on3:F (1.9) BS03 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    37998 1on6:A (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    37999 1on6:B (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38000 1on8:A (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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