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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37201 1oe0:D (2.4) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    37202 1oe1:A (1.04) BS01 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37203 1oe1:A (1.04) BS02 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37204 1oe2:A (1.12) BS01 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37205 1oe2:A (1.12) BS02 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37206 1oe3:A (1.15) BS01 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37207 1oe3:A (1.15) BS02 CU 1.7.2.1 GO:0005507 ... O68601 12691751
    37208 1oe4:A (2.0) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37209 1oe4:A (2.0) BS02 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37210 1oe4:B (2.0) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37211 1oe5:A (2.3) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37212 1oe5:A (2.3) BS02 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37213 1oe5:A (2.3) BS03 URA 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37214 1oe5:B (2.3) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37215 1oe6:A (2.65) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37216 1oe6:A (2.65) BS02 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37217 1oe6:A (2.65) BS03 HMU 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37218 1oe6:A (2.65) BS04 HMU 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37219 1oe6:B (2.65) BS01 dna 3.2.2.- GO:0006284 ... Q9YGN6 12820976
    37220 1oe7:A (1.8) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    37221 1oe7:B (1.8) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    37222 1oe8:A (1.65) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    37223 1oe8:B (1.65) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    37224 1oeb:A (1.76) BS01 peptide ? N/A O89100 12773374
    37225 1oeb:B (1.76) BS01 peptide ? N/A O89100 12773374
    37226 1oec:A (2.4) BS01 AA2 2.7.10.1 GO:0004672 ... P21802 N/A
    37227 1oee:A (2.1) BS01 CD ? GO:0005737 ... P76344 12909634
    37228 1oej:A (1.81) BS01 NI ? GO:0005737 ... P76344 12909634
    37229 1oek:A (2.4) BS01 ZN ? GO:0005737 ... P76344 12909634
    37230 1oek:A (2.4) BS02 ZN ? GO:0005737 ... P76344 12909634
    37231 1oep:A (2.3) BS01 ZN 4.2.1.11 GO:0000015 ... Q9NDH8 12899835
    37232 1oep:A (2.3) BS02 ZN 4.2.1.11 GO:0000015 ... Q9NDH8 12899835
    37233 1oeu:A (2.5) BS01 MG 3.1.3.48 GO:0004725 ... P18031 12802339
    37234 1oew:A (0.9) BS01 SER 3.4.23.22 GO:0004190 ... P11838 12876323
    37235 1oew:A (0.9) BS02 THR 3.4.23.22 GO:0004190 ... P11838 12876323
    37236 1oex:A (1.1) BS01 peptide 3.4.23.22 GO:0004190 ... P11838 12876323
    37237 1oez:W (2.15) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12754496
    37238 1oez:X (2.15) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12754496
    37239 1oez:Y (2.15) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12754496
    37240 1oez:Z (2.15) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12754496
    37241 1of0:A (2.45) BS01 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 N/A
    37242 1of0:A (2.45) BS02 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 N/A
    37243 1of0:A (2.45) BS03 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 N/A
    37244 1of0:A (2.45) BS04 OXY 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 N/A
    37245 1of0:A (2.45) BS05 EBS 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 N/A
    37246 1of1:A (1.95) BS01 SCT 2.7.1.21 GO:0004797 ... P0DTH5 15163659 MOAD: ic50=15uM
    37247 1of1:B (1.95) BS01 SCT 2.7.1.21 GO:0004797 ... P0DTH5 15163659 MOAD: ic50=15uM
    37248 1of2:A (2.2) BS01 peptide ? N/A P01889 14734527
    37249 1of3:A (2.0) BS01 CA ? N/A Q9RIK9 12791255
    37250 1of3:B (2.0) BS01 CA ? N/A Q9RIK9 12791255
    37251 1of4:A (1.6) BS01 BMA ? N/A Q9RIK9 12791255
    37252 1of4:A (1.6) BS02 BMA ? N/A Q9RIK9 12791255
    37253 1of4:A (1.6) BS03 BMA ? N/A Q9RIK9 12791255
    37254 1of4:A (1.6) BS04 BMA ? N/A Q9RIK9 12791255
    37255 1of4:A (1.6) BS05 CA ? N/A Q9RIK9 12791255
    37256 1of6:A (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37257 1of6:A (2.1) BS02 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37258 1of6:A (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37259 1of6:B (2.1) BS01 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37260 1of6:B (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37261 1of6:B (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37262 1of6:C (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37263 1of6:C (2.1) BS02 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37264 1of6:C (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37265 1of6:D (2.1) BS01 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37266 1of6:D (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37267 1of6:D (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37268 1of6:E (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37269 1of6:E (2.1) BS02 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37270 1of6:E (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37271 1of6:F (2.1) BS01 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37272 1of6:F (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37273 1of6:F (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37274 1of6:G (2.1) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37275 1of6:G (2.1) BS02 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37276 1of6:G (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37277 1of6:H (2.1) BS01 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37278 1of6:H (2.1) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37279 1of6:H (2.1) BS03 DTY 2.5.1.54 GO:0003849 ... P32449 N/A
    37280 1of8:A (1.5) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    37281 1of8:A (1.5) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    37282 1of8:A (1.5) BS03 G3P 2.5.1.54 GO:0003849 ... P32449 15019786
    37283 1of8:B (1.5) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    37284 1of8:B (1.5) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    37285 1of8:B (1.5) BS03 G3P 2.5.1.54 GO:0003849 ... P32449 15019786
    37286 1ofa:A (2.02) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    37287 1ofa:A (2.02) BS02 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    37288 1ofa:B (2.02) BS01 CO 2.5.1.54 GO:0003849 ... P32449 15019786
    37289 1ofa:B (2.02) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    37290 1ofb:A (2.01) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37291 1ofb:B (2.01) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37292 1ofc:X (1.9) BS01 GLC 3.6.4.- GO:0003677 ... Q24368 14536084
    37293 1ofd:A (2.0) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 12818206
    37294 1ofd:A (2.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    37295 1ofd:A (2.0) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 12818206
    37296 1ofd:B (2.0) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 12818206
    37297 1ofd:B (2.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    37298 1ofd:B (2.0) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 12818206
    37299 1ofe:A (2.45) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 12818206
    37300 1ofe:A (2.45) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    37301 1ofe:A (2.45) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 12818206
    37302 1ofe:A (2.45) BS04 ONL 1.4.7.1 GO:0006537 ... P55038 12818206
    37303 1ofe:B (2.45) BS01 FMN 1.4.7.1 GO:0006537 ... P55038 12818206
    37304 1ofe:B (2.45) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    37305 1ofe:B (2.45) BS03 AKG 1.4.7.1 GO:0006537 ... P55038 12818206
    37306 1ofe:B (2.45) BS04 ONL 1.4.7.1 GO:0006537 ... P55038 12818206
    37307 1off:A (1.8) BS01 FES ? GO:0005515 ... P27320 12818206
    37308 1ofg:A (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37309 1ofg:A (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37310 1ofg:B (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37311 1ofg:B (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37312 1ofg:C (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37313 1ofg:C (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37314 1ofg:D (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37315 1ofg:D (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37316 1ofg:E (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37317 1ofg:F (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37318 1ofh:A (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37319 1ofh:B (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37320 1ofh:C (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37321 1ofh:G (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37322 1ofh:H (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37323 1ofh:I (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37324 1ofh:L (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37325 1ofh:M (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37326 1ofh:N (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37327 1ofi:A (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37328 1ofi:B (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37329 1ofi:C (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37330 1ofi:G (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37331 1ofi:G (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37332 1ofi:H (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37333 1ofi:H (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37334 1ofi:I (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37335 1ofi:I (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37336 1ofi:L (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37337 1ofi:M (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37338 1ofi:N (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37339 1ofj:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    37340 1ofk:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    37341 1ofl:A (1.7) BS01 MAN 4.2.2.19 GO:0016829 ... Q46079 15155751
    37342 1ofl:A (1.7) BS02 GCU 4.2.2.19 GO:0016829 ... Q46079 15155751
    37343 1ofl:A (1.7) BS03 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37344 1ofl:A (1.7) BS04 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    37345 1ofl:A (1.7) BS05 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37346 1ofl:A (1.7) BS06 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    37347 1ofl:A (1.7) BS07 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37348 1ofl:A (1.7) BS08 NGK 4.2.2.19 GO:0016829 ... Q46079 15155751
    37349 1ofl:A (1.7) BS09 CA 4.2.2.19 GO:0016829 ... Q46079 15155751
    37350 1ofm:A (1.8) BS01 MAN 4.2.2.19 GO:0016829 ... Q46079 15155751
    37351 1ofm:A (1.8) BS02 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37352 1ofo:A (1.86) BS01 PGA 2.5.1.54 GO:0003849 ... P32449 15019786
    37353 1ofo:B (1.86) BS01 PGA 2.5.1.54 GO:0003849 ... P32449 15019786
    37354 1ofq:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37355 1ofq:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37356 1ofq:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37357 1ofq:D (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37358 1ofr:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37359 1ofr:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37360 1ofr:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37361 1ofr:C (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37362 1ofr:C (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37363 1ofr:D (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37364 1ofr:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37365 1ofr:D (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37366 1ofr:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37367 1ofr:F (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37368 1ofr:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37369 1ofr:G (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37370 1ofr:H (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37371 1ofr:H (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37372 1ofr:H (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37373 1ofs:A (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37374 1ofs:A (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    37375 1ofs:A (1.8) BS03 CA ? GO:0030246 ... P02867 N/A
    37376 1ofs:B (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37377 1ofs:B (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    37378 1ofs:C (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37379 1ofs:C (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    37380 1ofs:C (1.8) BS03 CA ? GO:0030246 ... P02867 N/A
    37381 1ofs:D (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37382 1ofs:D (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    37383 1ofu:A (2.1) BS01 GDP ? GO:0003924 ... P47204 12808143
    37384 1ofu:B (2.1) BS01 GDP ? GO:0003924 ... P47204 12808143
    37385 1ofv:A (1.7) BS01 FMN ? GO:0009055 ... P10340 10610791
    37386 1ofw:A (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37387 1ofw:A (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37388 1ofw:A (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37389 1ofw:A (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37390 1ofw:A (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37391 1ofw:A (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37392 1ofw:A (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37393 1ofw:A (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37394 1ofw:A (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37395 1ofw:B (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37396 1ofw:B (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37397 1ofw:B (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37398 1ofw:B (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37399 1ofw:B (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37400 1ofw:B (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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