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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36601 1o79:C (2.8) BS02 R23 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    36602 1o7a:A (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36603 1o7a:B (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36604 1o7a:C (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36605 1o7a:D (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36606 1o7a:E (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36607 1o7a:F (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    36608 1o7d:A (2.7) BS01 ZN 3.2.1.24 GO:0004559 ... Q29451 12634058
    36609 1o7d:C (2.7) BS01 MAN 3.2.1.24 GO:0003824 ... Q29451 12634058
    36610 1o7g:A (1.7) BS01 NPY 1.14.12.12 GO:0005506 ... P0A110 12586937
    36611 1o7g:A (1.7) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36612 1o7g:A (1.7) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36613 1o7h:A (2.2) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36614 1o7h:A (2.2) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36615 1o7k:A (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    36616 1o7k:B (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    36617 1o7k:C (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    36618 1o7k:C (2.0) BS02 SO4 ? GO:0005737 ... P14598 12356722
    36619 1o7l:A (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    36620 1o7l:A (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    36621 1o7l:B (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    36622 1o7l:B (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    36623 1o7l:C (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    36624 1o7l:C (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    36625 1o7l:D (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    36626 1o7l:D (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    36627 1o7l:D (2.75) BS03 MOO ? GO:0000987 ... P0A9G8 12581638
    36628 1o7l:D (2.75) BS04 CA ? GO:0000987 ... P0A9G8 12581638
    36629 1o7m:A (1.75) BS01 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    36630 1o7m:A (1.75) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36631 1o7m:A (1.75) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36632 1o7n:A (1.4) BS01 IND 1.14.12.12 GO:0005506 ... P0A110 12586937
    36633 1o7n:A (1.4) BS02 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    36634 1o7n:A (1.4) BS03 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36635 1o7n:A (1.4) BS04 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36636 1o7o:A (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    36637 1o7o:A (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    36638 1o7o:A (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    36639 1o7o:A (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    PDBbind: -logKd/Ki=4.49, Kd=0.032mM
    36640 1o7o:B (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    36641 1o7o:B (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    36642 1o7o:B (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    36643 1o7o:B (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    36644 1o7p:A (1.95) BS01 NDH 1.14.12.12 GO:0005506 ... P0A110 12586937
    36645 1o7p:A (1.95) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36646 1o7p:A (1.95) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36647 1o7q:A (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    36648 1o7q:A (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    36649 1o7q:A (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    36650 1o7q:A (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    36651 1o7q:B (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    36652 1o7q:B (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    36653 1o7q:B (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    36654 1o7q:B (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    36655 1o7s:A (1.75) BS01 CYS ? N/A Q9Y286 12438315
    36656 1o7t:A (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    36657 1o7t:B (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    36658 1o7t:C (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    36659 1o7t:D (1.65) BS01 HF3 ? GO:0006826 ... Q50964 12598891
    36660 1o7t:E (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    36661 1o7t:F (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    36662 1o7t:G (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    36663 1o7t:H (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    36664 1o7t:I (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    36665 1o7w:A (1.9) BS01 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    36666 1o7w:A (1.9) BS02 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    36667 1o86:A (2.0) BS01 GLY 3.4.15.1 GO:0006508 ... P12821 12540854
    36668 1o86:A (2.0) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    36669 1o86:A (2.0) BS03 LPR 3.4.15.1 GO:0006508 ... P12821 12540854 PDBbind: -logKd/Ki=9.57, Ki=0.27nM
    BindingDB: IC50=1.2nM
    36670 1o87:A (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    36671 1o87:B (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    36672 1o88:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36673 1o8a:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    36674 1o8a:A (2.0) BS02 NXA 3.4.15.1 GO:0006508 ... P12821 12540854
    36675 1o8b:A (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    36676 1o8b:B (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    36677 1o8c:A (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    36678 1o8c:B (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    36679 1o8c:C (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    36680 1o8c:D (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    36681 1o8d:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36682 1o8e:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36683 1o8f:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36684 1o8g:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36685 1o8h:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36686 1o8j:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36687 1o8k:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36688 1o8l:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    36689 1o8p:A (2.0) BS01 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    36690 1o8s:A (1.15) BS01 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    36691 1o8s:A (1.15) BS02 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    36692 1o8s:A (1.15) BS03 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    36693 1o8v:A (1.6) BS01 PLM ? GO:0005504 ... Q02970 12818189
    36694 1o90:A (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36695 1o90:A (3.1) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36696 1o90:A (3.1) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    36697 1o90:B (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36698 1o91:C (1.9) BS01 CPS ? N/A Q00780 12782141
    36699 1o92:A (3.19) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36700 1o92:A (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36701 1o92:A (3.19) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    36702 1o92:A (3.19) BS04 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    36703 1o92:A (3.19) BS05 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    36704 1o92:B (3.19) BS01 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    36705 1o92:B (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36706 1o93:A (3.49) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36707 1o93:A (3.49) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    36708 1o93:A (3.49) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    36709 1o93:B (3.49) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    36710 1o93:B (3.49) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    36711 1o94:A (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    36712 1o94:A (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    36713 1o94:A (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    36714 1o94:B (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    36715 1o94:B (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    36716 1o94:B (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    36717 1o94:C (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    36718 1o94:E (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    36719 1o95:A (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    36720 1o95:A (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    36721 1o95:A (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    36722 1o95:B (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    36723 1o95:B (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    36724 1o95:B (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    36725 1o95:C (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    36726 1o95:E (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    36727 1o96:A (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    36728 1o96:A (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    36729 1o96:B (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    36730 1o96:C (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    36731 1o96:C (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    36732 1o96:D (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    36733 1o96:E (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    36734 1o96:E (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    36735 1o96:F (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    36736 1o96:Q (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    36737 1o96:Z (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    36738 1o97:C (1.6) BS01 AMP ? GO:0000166 ... P53570 12567183
    36739 1o97:C (1.6) BS02 FAD ? GO:0000166 ... P53570 12567183
    36740 1o97:D (1.6) BS01 FAD ? GO:0009055 ... P53571 12567183
    36741 1o98:A (1.4) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    36742 1o98:A (1.4) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    36743 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    36744 1o99:A (2.65) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    36745 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    36746 1o9a:A (-1.00) BS01 peptide ? GO:0005576 ... P02751 12736686
    36747 1o9b:A (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    36748 1o9b:B (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    36749 1o9d:A (2.3) BS01 peptide ? GO:0005737 ... P93343 12606564
    36750 1o9e:A (2.6) BS01 FSC ? GO:0005737 ... P93343 12606564 PDBbind: -logKd/Ki=4.18, Kd=66uM
    36751 1o9f:A (2.7) BS01 peptide ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    36752 1o9f:A (2.7) BS02 FSC ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    36753 1o9i:A (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36754 1o9i:A (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36755 1o9i:A (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36756 1o9i:A (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36757 1o9i:A (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36758 1o9i:B (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36759 1o9i:B (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36760 1o9i:B (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36761 1o9i:B (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36762 1o9i:B (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36763 1o9i:C (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36764 1o9i:C (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36765 1o9i:C (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36766 1o9i:C (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36767 1o9i:C (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36768 1o9i:D (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36769 1o9i:D (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36770 1o9i:D (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36771 1o9i:D (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36772 1o9i:D (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36773 1o9i:E (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36774 1o9i:E (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36775 1o9i:E (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36776 1o9i:E (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36777 1o9i:E (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36778 1o9i:F (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36779 1o9i:F (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36780 1o9i:F (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    36781 1o9i:F (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    36782 1o9i:F (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    36783 1o9j:A (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    36784 1o9j:B (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    36785 1o9j:C (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    36786 1o9j:D (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    36787 1o9k:A (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36788 1o9k:B (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36789 1o9k:C (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36790 1o9k:D (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36791 1o9k:E (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36792 1o9k:F (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36793 1o9k:G (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36794 1o9k:H (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    36795 1o9l:A (2.4) BS01 EMT 2.8.3.5 GO:0005739 ... Q29551 N/A
    36796 1o9o:A (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    36797 1o9o:B (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    36798 1o9s:A (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    36799 1o9s:A (1.75) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    36800 1o9s:B (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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