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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    2402 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2403 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2404 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2405 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2406 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    2407 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2408 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    2409 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    2410 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    2411 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    2412 1b0o:A (2.5) BS01 PLM ? GO:0005515 ... P02754 9867826
    2413 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2414 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2415 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2416 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2417 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2418 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2419 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2420 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2421 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2422 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2423 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2424 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2425 1b0r:A (2.9) BS01 peptide ? N/A P04439 9741848
    2426 1b0t:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 N/A
    2427 1b0t:A (2.1) BS02 F3S ? GO:0003677 ... P00214 N/A
    2428 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    2429 1b0v:A (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2430 1b0v:A (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2431 1b0v:B (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2432 1b0v:B (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2433 1b0v:C (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2434 1b0v:C (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2435 1b0v:D (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2436 1b0v:D (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2437 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    2438 1b11:A (1.9) BS01 3TL 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    3.6.1.23
    GO:0004190 ... P16088 10651036 MOAD: Ki=41nM
    PDBbind: -logKd/Ki=7.39, Ki=41nM
    2439 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2440 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2441 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2442 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2443 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    2444 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2445 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2446 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2447 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2448 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2449 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2450 1b17:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2451 1b18:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2452 1b19:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2453 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    2454 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    2455 1b1c:A (1.93) BS01 FMN 1.6.2.4 GO:0010181 ... P16435 10048323
    2456 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    2457 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    2458 1b1h:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10422831
    2459 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2460 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2461 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2462 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2463 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    2464 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    2465 1b23:P (2.6) BS01 rna ? GO:0003746 ... Q01698 10368282
    2466 1b23:P (2.6) BS02 CYS ? GO:0003746 ... Q01698 10368282
    2467 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    2468 1b23:P (2.6) BS04 GNP ? GO:0003746 ... Q01698 10368282
    2469 1b25:A (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2470 1b25:A (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2471 1b25:B (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2472 1b25:B (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2473 1b25:C (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2474 1b25:C (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2475 1b25:D (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2476 1b25:D (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2477 1b2a:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2478 1b2b:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2479 1b2c:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2480 1b2d:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2481 1b2e:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2482 1b2f:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2483 1b2g:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2484 1b2h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2485 1b2i:A (-1.00) BS01 AMH 3.4.21.7 N/A P00747 10625440 PDBbind: -logKd/Ki=5.51, IC50=3.1uM
    BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    2486 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    2487 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    2488 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    2489 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    2490 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2491 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2492 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2493 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2494 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2495 1b2r:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 10651039
    2496 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    2497 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    2498 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    2499 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    2500 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    2501 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    2502 1b2z:C (2.03) BS01 ZN 3.1.27.- GO:0003723 ... P00648 11914482
    2503 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2504 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2505 1b32:A (1.75) BS01 peptide ? GO:0015031 ... P06202 10438628
    2506 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    2507 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2508 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2509 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    2510 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    2511 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    2512 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    2513 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2514 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    PDBbind: -logKd/Ki=6.60, Kd=0.254uM
    2515 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2516 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    PDBbind: -logKd/Ki=6.92, Kd=0.120uM
    2517 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2518 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2519 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2520 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2521 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2522 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2523 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2524 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2525 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2526 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2527 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2528 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2529 1b3d:B (2.3) BS06 S27 3.4.24.17 GO:0004222 ... P08254 10543949 BindingDB: IC50=24nM
    2530 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    2531 1b3e:A (2.5) BS02 CO3 ? GO:0005576 ... P02787 10029548
    2532 1b3f:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    2533 1b3g:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2534 1b3h:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10422831
    2535 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    2536 1b3l:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2537 1b3l:C (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2538 1b3n:A (2.65) BS01 CER 2.3.1.179 GO:0004315 ... P0AAI5 10037680
    2539 1b3o:A (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    2540 1b3o:A (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    2541 1b3o:B (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    2542 1b3o:B (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    2543 1b3r:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2544 1b3r:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2545 1b3r:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2546 1b3r:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2547 1b3r:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2548 1b3r:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2549 1b3r:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2550 1b3r:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    2551 1b3t:A (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2552 1b3t:A (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2553 1b3t:B (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2554 1b3t:B (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    2555 1b3v:A (2.4) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2556 1b3v:A (2.4) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2557 1b3v:A (2.4) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    2558 1b3v:A (2.4) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2559 1b3w:A (2.6) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2560 1b3w:A (2.6) BS02 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    2561 1b3w:A (2.6) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2562 1b3x:A (2.2) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2563 1b3x:A (2.2) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2564 1b3x:A (2.2) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2565 1b3y:A (2.45) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2566 1b3y:A (2.45) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2567 1b3y:A (2.45) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    2568 1b3z:A (2.3) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2569 1b3z:A (2.3) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2570 1b3z:A (2.3) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2571 1b3z:A (2.3) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2572 1b40:A (2.2) BS01 peptide ? GO:0015031 ... P06202 10438628
    2573 1b42:A (2.2) BS01 SAH 2.1.1.57 GO:0003746 ... P07617 10377383
    2574 1b42:A (2.2) BS02 M1A 2.1.1.57 GO:0003746 ... P07617 10377383 MOAD: Kd=97.9uM
    PDBbind: -logKd/Ki=4.01, Kd=97.9uM
    2575 1b46:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    2576 1b47:A (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    2577 1b47:B (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    2578 1b47:C (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    2579 1b48:A (2.6) BS01 HAG 2.5.1.18 GO:0004364 ... P24472 10508391
    2580 1b48:A (2.6) BS02 GSH 2.5.1.18 GO:0004364 ... P24472 10508391
    2581 1b48:B (2.6) BS01 GSH 2.5.1.18 GO:0004364 ... P24472 10508391
    2582 1b49:A (2.3) BS01 PO4 2.1.2.8 GO:0016740 ... P08773 10064578
    2583 1b49:C (2.3) BS01 PO4 2.1.2.8 GO:0016740 ... P08773 10064578
    2584 1b4b:A (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    2585 1b4b:A (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    2586 1b4b:B (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    2587 1b4b:B (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    2588 1b4b:C (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    2589 1b4b:C (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    2590 1b4d:A (2.0) BS01 CRA 2.4.1.1 GO:0000166 ... P00489 10211820 MOAD: Ki=15.6uM
    PDBbind: -logKd/Ki=4.81, Ki=15.6uM
    BindingDB: Ki=16000nM
    2591 1b4d:A (2.0) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 10211820
    2592 1b4d:A (2.0) BS03 IMP 2.4.1.1 GO:0000166 ... P00489 10211820
    2593 1b4e:A (2.0) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 10194344
    2594 1b4e:A (2.0) BS02 ZN 4.2.1.24 GO:0000287 ... P0ACB2 10194344
    2595 1b4e:A (2.0) BS03 SHF 4.2.1.24 GO:0000287 ... P0ACB2 10194344 BindingDB: Ki=2.200e+6nM
    2596 1b4h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2597 1b4k:A (1.67) BS01 SHF 4.2.1.24 GO:0004655 ... Q59643 10356331
    2598 1b4k:B (1.67) BS01 SHF 4.2.1.24 GO:0004655 ... Q59643 10356331
    2599 1b4l:A (1.8) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    2600 1b4l:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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