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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22001 1iz8:A (2.0) BS02 CA 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    22002 1iz8:A (2.0) BS03 PDO 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    22003 1iza:B (2.5) BS01 peptide ? GO:0005179 ... P01315 1361949
    22004 1iza:D (2.5) BS01 peptide ? GO:0005179 ... P01315 1361949
    22005 1izb:B (2.0) BS01 peptide ? GO:0005179 ... P01315 1361949
    22006 1izb:D (2.0) BS01 peptide ? GO:0005179 ... P01315 1361949
    22007 1izc:A (1.7) BS01 MG ? GO:0003824 ... Q9UVD4 12634789
    22008 1izc:A (1.7) BS02 PYR ? GO:0003824 ... Q9UVD4 12634789
    22009 1ize:A (1.9) BS01 peptide 3.4.23.18 GO:0004190 ... P0CU33 12595261
    22010 1ize:A (1.9) BS02 MAN 3.4.23.18 GO:0004190 ... P0CU33 12595261
    22011 1izh:A (1.9) BS01 Q50 3.4.23.16 GO:0004190 ... Q90EB9 12460574 PDBbind: -logKd/Ki=7.70, Ki=0.02uM
    22012 1izh:B (1.9) BS01 Q50 3.4.23.16 GO:0004190 ... Q90EB9 12460574 MOAD: Ki=0.02uM
    PDBbind: -logKd/Ki=7.70, Ki=0.02uM
    22013 1izi:A (2.15) BS01 Q50 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 12460574 PDBbind: -logKd/Ki=6.59, Ki=0.26uM
    22014 1izi:B (2.15) BS01 Q50 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 12460574 MOAD: Ki=0.26nM
    PDBbind: -logKd/Ki=6.59, Ki=0.26uM
    22015 1izj:A (2.2) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22016 1izj:A (2.2) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22017 1izj:A (2.2) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22018 1izk:A (2.2) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22019 1izk:A (2.2) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22020 1izk:A (2.2) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12860426
    22021 1izl:0 (3.7) BS01 HEM ? GO:0005506 ... P0A387 12518057
    22022 1izl:A (3.7) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    22023 1izl:A (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    22024 1izl:B (3.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22025 1izl:B (3.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22026 1izl:B (3.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22027 1izl:B (3.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22028 1izl:B (3.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22029 1izl:B (3.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22030 1izl:B (3.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22031 1izl:B (3.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22032 1izl:B (3.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22033 1izl:C (3.7) BS01 peptide ? GO:0005737 ... Q8DIF8 12518057
    22034 1izl:C (3.7) BS02 CLA ? GO:0005737 ... Q8DIF8 12518057
    22035 1izl:C (3.7) BS03 CLA ? GO:0005737 ... Q8DIF8 12518057
    22036 1izl:C (3.7) BS04 CLA ? GO:0005737 ... Q8DIF8 12518057
    22037 1izl:C (3.7) BS05 CLA ? GO:0005737 ... Q8DIF8 12518057
    22038 1izl:C (3.7) BS06 CLA ? GO:0005737 ... Q8DIF8 12518057
    22039 1izl:C (3.7) BS07 CLA ? GO:0005737 ... Q8DIF8 12518057
    22040 1izl:C (3.7) BS08 CLA ? GO:0005737 ... Q8DIF8 12518057
    22041 1izl:C (3.7) BS09 CLA ? GO:0005737 ... Q8DIF8 12518057
    22042 1izl:C (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    22043 1izl:C (3.7) BS11 CLA ? GO:0005737 ... Q8DIF8 12518057
    22044 1izl:D (3.7) BS01 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22045 1izl:D (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22046 1izl:D (3.7) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22047 1izl:D (3.7) BS04 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22048 1izl:E (3.7) BS01 peptide ? GO:0005506 ... Q8DIP0 12518057
    22049 1izl:J (3.7) BS01 MN 1.10.3.9 GO:0005506 ... P51765 12518057
    22050 1izl:J (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    22051 1izl:J (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    22052 1izl:L (3.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22053 1izl:L (3.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22054 1izl:L (3.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22055 1izl:L (3.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22056 1izl:L (3.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22057 1izl:L (3.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22058 1izl:L (3.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22059 1izl:L (3.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22060 1izl:L (3.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22061 1izl:L (3.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 12518057
    22062 1izl:M (3.7) BS01 peptide ? GO:0005737 ... Q8DIF8 12518057
    22063 1izl:M (3.7) BS02 CLA ? GO:0005737 ... Q8DIF8 12518057
    22064 1izl:M (3.7) BS03 CLA ? GO:0005737 ... Q8DIF8 12518057
    22065 1izl:M (3.7) BS04 CLA ? GO:0005737 ... Q8DIF8 12518057
    22066 1izl:M (3.7) BS05 CLA ? GO:0005737 ... Q8DIF8 12518057
    22067 1izl:M (3.7) BS06 CLA ? GO:0005737 ... Q8DIF8 12518057
    22068 1izl:M (3.7) BS07 CLA ? GO:0005737 ... Q8DIF8 12518057
    22069 1izl:M (3.7) BS08 CLA ? GO:0005737 ... Q8DIF8 12518057
    22070 1izl:M (3.7) BS09 CLA ? GO:0005737 ... Q8DIF8 12518057
    22071 1izl:M (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    22072 1izl:N (3.7) BS01 peptide 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22073 1izl:N (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22074 1izl:N (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22075 1izl:N (3.7) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22076 1izl:N (3.7) BS05 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    22077 1izl:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 12518057
    22078 1izo:A (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    22079 1izo:B (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    22080 1izo:C (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    22081 1j01:A (2.0) BS01 XIL 3.2.1.8
    3.2.1.91
    GO:0004553 ... P07986 N/A MOAD: Ki=0.34uM
    PDBbind: -logKd/Ki=6.47, Ki=0.34uM
    22082 1j02:A (1.7) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 12924938
    22083 1j02:A (1.7) BS02 NO 1.14.14.18 GO:0001525 ... P06762 12924938
    22084 1j04:A (2.6) BS01 AOA 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 20208150
    22085 1j06:A (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    22086 1j06:B (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    22087 1j07:A (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    22088 1j07:A (2.35) BS02 DCU 3.1.1.7 GO:0001919 ... P21836 12505979 MOAD: Ki=0.021uM
    PDBbind: -logKd/Ki=7.68, Ki=0.021uM
    22089 1j07:B (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    22090 1j07:B (2.35) BS02 DCU 3.1.1.7 GO:0001919 ... P21836 12505979 MOAD: Ki=0.021uM
    22091 1j09:A (1.8) BS01 GLU 6.1.1.17 GO:0000049 ... P27000 12554668
    22092 1j09:A (1.8) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    22093 1j0a:A (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    22094 1j0a:B (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    22095 1j0a:C (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    22096 1j0b:A (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22097 1j0b:B (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22098 1j0b:C (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22099 1j0b:D (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22100 1j0b:E (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22101 1j0b:F (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22102 1j0b:G (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22103 1j0b:H (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22104 1j0b:I (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22105 1j0b:J (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22106 1j0b:K (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22107 1j0b:L (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22108 1j0b:M (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22109 1j0b:N (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22110 1j0b:O (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22111 1j0b:P (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22112 1j0b:Q (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22113 1j0b:R (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22114 1j0b:S (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22115 1j0b:T (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22116 1j0b:U (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22117 1j0b:V (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22118 1j0b:W (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22119 1j0b:X (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22120 1j0c:A (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22121 1j0c:B (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22122 1j0c:C (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22123 1j0c:D (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22124 1j0d:A (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22125 1j0d:B (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22126 1j0d:C (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22127 1j0d:D (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22128 1j0e:A (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22129 1j0e:A (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22130 1j0e:B (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22131 1j0e:B (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22132 1j0e:C (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22133 1j0e:C (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22134 1j0e:D (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22135 1j0e:D (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    22136 1j0h:A (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    22137 1j0h:B (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    22138 1j0i:A (2.4) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22139 1j0i:A (2.4) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22140 1j0i:B (2.4) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22141 1j0i:B (2.4) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22142 1j0i:B (2.4) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22143 1j0j:A (2.8) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22144 1j0j:A (2.8) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22145 1j0j:A (2.8) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22146 1j0j:A (2.8) BS04 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22147 1j0j:B (2.8) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22148 1j0j:B (2.8) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22149 1j0j:B (2.8) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22150 1j0j:B (2.8) BS04 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22151 1j0k:A (3.2) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22152 1j0k:A (3.2) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22153 1j0k:A (3.2) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22154 1j0k:B (3.2) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22155 1j0k:B (3.2) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    22156 1j0m:A (2.3) BS01 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    22157 1j0n:A (2.4) BS01 CEG 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    22158 1j0n:A (2.4) BS02 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    22159 1j0o:A (1.15) BS01 HEM ? GO:0009055 ... P00132 14581238
    22160 1j0o:A (1.15) BS02 HEM ? GO:0009055 ... P00132 14581238
    22161 1j0o:A (1.15) BS03 HEM ? GO:0009055 ... P00132 14581238
    22162 1j0o:A (1.15) BS04 HEM ? GO:0009055 ... P00132 14581238
    22163 1j0p:A (0.91) BS01 HEM ? GO:0009055 ... P00132 14581238
    22164 1j0p:A (0.91) BS02 HEM ? GO:0009055 ... P00132 14581238
    22165 1j0p:A (0.91) BS03 HEM ? GO:0009055 ... P00132 14581238
    22166 1j0p:A (0.91) BS04 HEM ? GO:0009055 ... P00132 14581238
    22167 1j0q:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 12893266
    22168 1j0x:P (2.4) BS01 NAD 1.2.1.12
    2.6.99.-
    GO:0000226 ... P46406 14646080 MOAD: Kd=0.01uM
    22169 1j0x:R (2.4) BS01 NAD 1.2.1.12
    2.6.99.-
    GO:0000226 ... P46406 14646080 MOAD: Kd=0.01uM
    22170 1j0y:A (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22171 1j0y:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22172 1j0y:B (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22173 1j0y:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22174 1j0y:C (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22175 1j0y:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22176 1j0y:D (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22177 1j0y:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22178 1j0z:A (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22179 1j0z:A (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22180 1j0z:A (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22181 1j0z:A (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22182 1j0z:A (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22183 1j0z:B (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22184 1j0z:B (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22185 1j0z:B (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22186 1j0z:B (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22187 1j0z:B (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22188 1j0z:C (2.2) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22189 1j0z:C (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22190 1j0z:C (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22191 1j0z:C (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22192 1j0z:C (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22193 1j0z:D (2.2) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22194 1j0z:D (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22195 1j0z:D (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    22196 1j0z:D (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22197 1j0z:D (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    22198 1j10:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22199 1j10:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    22200 1j10:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 12761294

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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