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BioLiP Library
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6qtz:D
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0002181 ... P10664 31115337
    2 6qtz:H
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0000470 ... P17076 31115337
    3 6qtz:O
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0002181 ... P05748 31115337
    4 6qtz:U
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0000448 ... P05740 31115337
    5 6qtz:W
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0000027 ... P04456 31115337
    6 6qtz:X
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0002181 ... P05743 31115337
    7 6qtz:Z
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0000463 ... P0CX84 31115337
    8 6qtz:i
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0000448 ... P49166 31115337
    9 6qtz:k
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0002181 ... P04650 31115337
    10 6qtz:z
    (3.5)    		 BS02 >6qtz:y (identical to 8hfr:3n, 6qik:y, 6qt0:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucau
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
......
    		 ? GO:0005737 ... Q06709 31115337
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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