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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 7p81:V
    (2.79)
    BS01 >7p81:r (identical to 7p80:I, 7p80:J, 7p81:c, 7p81:d, 7p81:e, 7p81:f, 7p81:g, 7p81:h, 7p81:i, 7p81:j, 7p81:k, 7p81:l, 7p81:m, 7p81:n, 7p81:o, 7p81:p, 7p81:q, 7p81:t, 7p81:u, 7p81:v, 7p81:w, 6pmd:H, 6pmd:J, 6pmd:O, 6pmd:P, 6pmd:Q, 6pmd:R, 6pmd:U, 6pmd:V, 6pmd:X, 6pmd:Y, 6pmd:Z)
    tFSPKAK
    3.4.21.92 GO:0004176 ... P80244 35593068
    2 7p81:W
    (2.79)
    BS01 >7p81:r (identical to 7p80:I, 7p80:J, 7p81:c, 7p81:d, 7p81:e, 7p81:f, 7p81:g, 7p81:h, 7p81:i, 7p81:j, 7p81:k, 7p81:l, 7p81:m, 7p81:n, 7p81:o, 7p81:p, 7p81:q, 7p81:t, 7p81:u, 7p81:v, 7p81:w, 6pmd:H, 6pmd:J, 6pmd:O, 6pmd:P, 6pmd:Q, 6pmd:R, 6pmd:U, 6pmd:V, 6pmd:X, 6pmd:Y, 6pmd:Z)
    tFSPKAK
    3.4.21.92 GO:0004176 ... P80244 35593068

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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