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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5dzk:b
    (3.07)    		 BS01 >5dzk:p (identical to 5dzk:O, 5dzk:P, 5dzk:Q, 5dzk:R, 5dzk:S, 5dzk:T, 5dzk:U, 5dzk:V, 5dzk:W, 5dzk:X, 5dzk:Y, 5dzk:Z, 5dzk:1, 5dzk:2, 5dzk:o, 5dzk:q, 5dzk:r, 5dzk:s, 5dzk:t, 5dzk:u, 5dzk:v, 5dzk:w, 5dzk:x, 5dzk:y, 5dzk:z, 5dzk:3, 5dzk:4, 7x8x:c, 7x8x:e, 7x8x:f, 7x8x:g, 7x8x:h, 7x8x:i, 7x8x:j, 7x8x:k, 7x8x:l, 7x8x:m, 7x8x:n, 7x8x:o, 7x8x:p, 7x8x:q, 7x8x:r, 7x8x:s, 7x8x:t, 7x8x:u, 7x8x:v, 7x8x:w, 7x8x:x, 7x8x:y, 7x8x:z, 7x8x:0, 7x8x:1, 7x8x:2, 7x8x:3, 7x8x:4)
    cLL
    		 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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