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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6bgl:O
    (3.4)    		 BS01 >6bgl:k (identical to 6bgl:B, 6bgl:d, 6bgl:e, 6bgl:f, 6bgl:g, 6bgl:h, 6bgl:i, 6bgl:j, 6bgl:l, 6bgl:m, 6bgl:n, 6bgl:o, 6bgl:p, 6bgo:d, 6bgo:e, 6bgo:f, 6bgo:g, 6bgo:h, 6bgo:i, 6bgo:j, 8d6v:d, 8d6v:e, 8d6v:f, 8d6v:g, 8d6v:h, 8d6v:i, 8d6v:j, 8d6w:d, 8d6w:e, 8d6w:f, 8d6w:g, 8d6w:h, 8d6w:i, 8d6w:j, 8d6x:d, 8d6x:e, 8d6x:f, 8d6x:g, 8d6x:h, 8d6x:i, 8d6x:j, 8d6y:d, 8d6y:e, 8d6y:f, 8d6y:g, 8d6y:h, 8d6y:i, 8d6y:j)
    GQYL
    		 3.4.25.1 GO:0000502 ... P9WHU1 29414791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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