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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dr2:dA (3.8) BS46 SF4 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    2 7dr2:dA (3.8) BS47 CLA 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    3 7dr2:dA (3.8) BS48 CLA 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    4 7dr2:dA (3.8) BS49 CLA 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    5 7dr2:dA (3.8) BS50 CLA 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    6 7dr2:dA (3.8) BS51 CLA 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    7 7dr2:dB (3.8) BS01 peptide 1.97.1.12 GO:0000287 ... P48113 N/A
    8 7dr2:dB (3.8) BS02 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    9 7dr2:dB (3.8) BS03 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    10 7dr2:dB (3.8) BS04 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    11 7dr2:dB (3.8) BS05 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    12 7dr2:dB (3.8) BS06 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    13 7dr2:dB (3.8) BS07 SF4 1.97.1.12 GO:0000287 ... P48113 N/A
    14 7dr2:dB (3.8) BS08 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    15 7dr2:dB (3.8) BS09 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    16 7dr2:dB (3.8) BS10 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    17 7dr2:dB (3.8) BS11 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    18 7dr2:dB (3.8) BS12 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    19 7dr2:dB (3.8) BS13 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    20 7dr2:dB (3.8) BS14 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    21 7dr2:dB (3.8) BS15 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    22 7dr2:dB (3.8) BS16 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    23 7dr2:dB (3.8) BS17 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    24 7dr2:dB (3.8) BS18 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    25 7dr2:dB (3.8) BS19 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    26 7dr2:dB (3.8) BS20 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    27 7dr2:dB (3.8) BS21 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    28 7dr2:dB (3.8) BS22 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    29 7dr2:dB (3.8) BS23 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    30 7dr2:dB (3.8) BS24 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    31 7dr2:dB (3.8) BS25 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    32 7dr2:dB (3.8) BS26 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    33 7dr2:dB (3.8) BS27 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    34 7dr2:dB (3.8) BS28 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    35 7dr2:dB (3.8) BS29 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    36 7dr2:dB (3.8) BS30 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    37 7dr2:dB (3.8) BS31 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    38 7dr2:dB (3.8) BS32 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    39 7dr2:dB (3.8) BS33 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    40 7dr2:dB (3.8) BS34 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    41 7dr2:dB (3.8) BS35 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    42 7dr2:dB (3.8) BS36 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    43 7dr2:dB (3.8) BS37 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    44 7dr2:dB (3.8) BS38 CLA 1.97.1.12 GO:0000287 ... P48113 N/A
    45 7dr2:dB (3.8) BS39 PQN 1.97.1.12 GO:0000287 ... P48113 N/A
    46 7dr2:dF (3.8) BS02 CLA ? GO:0009522 ... P48115 N/A
    47 7dr2:dF (3.8) BS03 CLA ? GO:0009522 ... P48115 N/A
    48 7dr2:dI (3.8) BS01 CLA ? GO:0009522 ... P48116 N/A
    49 7dr2:dI (3.8) BS02 CLA ? GO:0009522 ... P48116 N/A
    50 7dr2:dJ (3.8) BS03 CLA ? GO:0009522 ... P48117 N/A
    51 7dr2:dL (3.8) BS04 CLA N/A GO:0009522 ... N/A N/A
    52 7dr2:dL (3.8) BS05 CLA N/A GO:0009522 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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