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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jlm:a (2.35) BS07 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    2 6jlm:a (2.35) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 31624207
    3 6jlm:a (2.35) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 31624207
    4 6jlm:a (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    5 6jlm:d (2.35) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    6 6jlm:d (2.35) BS02 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    7 6jlm:d (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    8 6jlm:d (2.35) BS04 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    9 6jlm:d (2.35) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    10 6jlm:d (2.35) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    11 6jlm:d (2.35) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    12 6jlm:d (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    13 6jlm:d (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    14 6jlm:x (2.35) BS01 CLA ? GO:0009523 ... D0VWR4 31624207
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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