Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6wxx:C
    (3.0)    		 BS01 >6wxx:Y (identical to 8b0r:B, 4ba2:R, 8bao:C, 7bdv:F, 7bdv:H, 7did:C, 5e02:C, 8g90:B, 8g91:B, 4hot:X, 8jh1:C, 4lj0:C, 4lj0:D, 6o6v:C, 6o6v:D, 6o6x:C, 6o6x:D, 6o7b:C, 6o7b:D, 6o7h:K, 6o7i:I, 6ov0:E, 6ov0:H, 8phj:Z, 8q3z:X, 8q40:X, 8q41:X, 8q42:X, 8q43:X, 8q44:X, 8qjk:C, 3qsu:R, 3qsu:P, 6r7b:D, 6r9r:D, 6sce:B, 6scf:K, 6scf:I, 6scf:L, 6scf:M, 7sos:B, 7sov:B, 8t65:C, 5udk:B, 6w11:C, 5w5i:B, 5w5i:D, 6wxq:E, 6wxx:X, 6xl1:C, 8y7g:C, 7ygh:C, 7ygl:C, 6yud:K, 6yud:M, 6yud:O, 6yud:P, 6yud:Q, 7z55:CCC)
    aaaa
....
    		 ? GO:0003676 ... F2NWD3 33461211
    2 6wxx:D
    (3.0)    		 BS01 >6wxx:Y (identical to 8b0r:B, 4ba2:R, 8bao:C, 7bdv:F, 7bdv:H, 7did:C, 5e02:C, 8g90:B, 8g91:B, 4hot:X, 8jh1:C, 4lj0:C, 4lj0:D, 6o6v:C, 6o6v:D, 6o6x:C, 6o6x:D, 6o7b:C, 6o7b:D, 6o7h:K, 6o7i:I, 6ov0:E, 6ov0:H, 8phj:Z, 8q3z:X, 8q40:X, 8q41:X, 8q42:X, 8q43:X, 8q44:X, 8qjk:C, 3qsu:R, 3qsu:P, 6r7b:D, 6r9r:D, 6sce:B, 6scf:K, 6scf:I, 6scf:L, 6scf:M, 7sos:B, 7sov:B, 8t65:C, 5udk:B, 6w11:C, 5w5i:B, 5w5i:D, 6wxq:E, 6wxx:X, 6xl1:C, 8y7g:C, 7ygh:C, 7ygl:C, 6yud:K, 6yud:M, 6yud:O, 6yud:P, 6yud:Q, 7z55:CCC)
    aaaa
....
    		 ? GO:0003676 ... F2NWD3 33461211
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218